RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 S100A7AQ86SG5 101 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 TET2Q6N021 2002 aaPredicted RBP12.6□□□□□ -0.39
CPSF1-213ENST00000620219 OR2T8A6NH00 312 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 GPR183P32249 361 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 MFAP4P55083 255 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 RNASEH2CQ8TDP1 164 aaKnown RBP12.6□□□□□ -0.39
CPSF1-213ENST00000620219 PITPNC1Q9UKF7 332 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 DSCAML1Q8TD84 2053 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 TRAV5A0A0B4J249 113 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 ZNF785A8K8V0 405 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 CACNG8Q8WXS5 425 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 HIGD1AQ9Y241 93 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 ZNF506Q5JVG8 444 aa12.59□□□□□ -0.39
CPSF1-213ENST00000620219 SPOCK3Q9BQ16 436 aa12.59□□□□□ -0.39
CPSF1-213ENST00000620219 TMEM167BQ9NRX6 74 aa12.59□□□□□ -0.39
CPSF1-213ENST00000620219 ST6GALNAC6Q969X2 333 aa12.59□□□□□ -0.39
CPSF1-213ENST00000620219 IGHV3-66A0A0C4DH42 116 aa12.59□□□□□ -0.39
CPSF1-213ENST00000620219 A0A1W2PPQ1 181 aa12.59□□□□□ -0.39
CPSF1-213ENST00000620219 IGHV4-38-2P0DP08 117 aa12.59□□□□□ -0.39
CPSF1-213ENST00000620219 PGPEP1LA6NFU8 196 aa12.58□□□□□ -0.39
CPSF1-213ENST00000620219 C8orf88P0DMB2 117 aa12.58□□□□□ -0.39
CPSF1-213ENST00000620219 C11orf42Q8N5U0 333 aa12.58□□□□□ -0.39
CPSF1-213ENST00000620219 OR4F17Q8NGA8 305 aa12.58□□□□□ -0.39
CPSF1-213ENST00000620219 TBX15Q96SF7 602 aa12.58□□□□□ -0.39
CPSF1-213ENST00000620219 LINC00574Q9H8X3 128 aa12.58□□□□□ -0.39
CPSF1-213ENST00000620219 GCHFRP30047 84 aa12.58□□□□□ -0.4
CPSF1-213ENST00000620219 DSCR9P59020 149 aa12.58□□□□□ -0.4
CPSF1-213ENST00000620219 SELENOKQ9Y6D0 94 aa12.58□□□□□ -0.4
CPSF1-213ENST00000620219 SPINK4O60575 86 aa12.58□□□□□ -0.4
CPSF1-213ENST00000620219 POU2AF1Q16633 256 aa12.58□□□□□ -0.4
CPSF1-213ENST00000620219 TPPP3Q9BW30 176 aa12.58□□□□□ -0.4
CPSF1-213ENST00000620219 C21orf62Q9NYP8 219 aa12.58□□□□□ -0.4
CPSF1-213ENST00000620219 PYYP10082 97 aa12.58□□□□□ -0.4
CPSF1-213ENST00000620219 IGHV1-69DA0A0B4J2H0 117 aa12.57□□□□□ -0.4
CPSF1-213ENST00000620219 G3V318 75 aa12.57□□□□□ -0.4
CPSF1-213ENST00000620219 IGHV1-69P01742 117 aa12.57□□□□□ -0.4
CPSF1-213ENST00000620219 TRGV3P03979 118 aa12.57□□□□□ -0.4
CPSF1-213ENST00000620219 SLC25A16P16260 332 aa12.57□□□□□ -0.4
CPSF1-213ENST00000620219 ATP5IP56385 69 aaPredicted RBP12.57□□□□□ -0.4
CPSF1-213ENST00000620219 OR11H6Q8NGC7 330 aa12.57□□□□□ -0.4
CPSF1-213ENST00000620219 DAZAP1Q96EP5 407 aaKnown RBP12.57□□□□□ -0.4
CPSF1-213ENST00000620219 MAS1LP35410 378 aa12.57□□□□□ -0.4
CPSF1-213ENST00000620219 TPPP2P59282 170 aa12.57□□□□□ -0.4
CPSF1-213ENST00000620219 BSXQ3C1V8 233 aa12.57□□□□□ -0.4
CPSF1-213ENST00000620219 OR1P1Q8NH06 330 aa12.57□□□□□ -0.4
CPSF1-213ENST00000620219 PMS2P5A8MQ11 134 aa12.57□□□□□ -0.4
CPSF1-213ENST00000620219 TNFRSF13BO14836 293 aaPredicted RBP12.57□□□□□ -0.4
CPSF1-213ENST00000620219 CLEC19AQ6UXS0 136 aa12.57□□□□□ -0.4
CPSF1-213ENST00000620219 PARLQ9H300 379 aa12.57□□□□□ -0.4
CPSF1-213ENST00000620219 FUT9Q9Y231 359 aa12.57□□□□□ -0.4
CPSF1-213ENST00000620219 CRYBB3P26998 211 aa12.56□□□□□ -0.4
CPSF1-213ENST00000620219 IL17RELQ6ZVW7 336 aa12.56□□□□□ -0.4
CPSF1-213ENST00000620219 CLN5O75503 358 aa12.56□□□□□ -0.4
CPSF1-213ENST00000620219 GPX4P36969 197 aaPredicted RBP12.56□□□□□ -0.4
CPSF1-213ENST00000620219 CNN1P51911 297 aaKnown RBP12.56□□□□□ -0.4
CPSF1-213ENST00000620219 ERVFC1-1P60608 527 aa12.56□□□□□ -0.4
CPSF1-213ENST00000620219 FLI1Q01543 452 aaPredicted RBP12.56□□□□□ -0.4
CPSF1-213ENST00000620219 DYNAPQ8N1N2 210 aa12.56□□□□□ -0.4
CPSF1-213ENST00000620219 TMEM170AQ8WVE7 144 aa12.56□□□□□ -0.4
CPSF1-213ENST00000620219 F11RQ9Y624 299 aaKnown RBP12.56□□□□□ -0.4
CPSF1-213ENST00000620219 CENPVL3A0A0U1RRI6 287 aa12.56□□□□□ -0.4
CPSF1-213ENST00000620219 KRTAP10-9P60411 292 aa12.56□□□□□ -0.4
CPSF1-213ENST00000620219 RHOGP84095 191 aa12.56□□□□□ -0.4
CPSF1-213ENST00000620219 PDZD11Q5EBL8 140 aa12.56□□□□□ -0.4
CPSF1-213ENST00000620219 LINC01356Q8N9X3 169 aa12.56□□□□□ -0.4
CPSF1-213ENST00000620219 NHLRC2Q8NBF2 726 aa12.56□□□□□ -0.4
CPSF1-213ENST00000620219 TBL2Q9Y4P3 447 aaKnown RBP12.56□□□□□ -0.4
CPSF1-213ENST00000620219 RPL29P47914 159 aaKnown RBP12.56□□□□□ -0.4
CPSF1-213ENST00000620219 PQLC2Q6ZP29 291 aa12.56□□□□□ -0.4
CPSF1-213ENST00000620219 OR1L6Q8NGR2 347 aa12.56□□□□□ -0.4
CPSF1-213ENST00000620219 FNDC4Q9H6D8 234 aaPredicted RBP12.56□□□□□ -0.4
CPSF1-213ENST00000620219 DCHS2Q6V1P9 2916 aa12.55□□□□□ -0.4
CPSF1-213ENST00000620219 GNG4P50150 75 aa12.55□□□□□ -0.4
CPSF1-213ENST00000620219 RNF212Q495C1 297 aa12.55□□□□□ -0.4
CPSF1-213ENST00000620219 ZNF329Q86UD4 541 aa12.55□□□□□ -0.4
CPSF1-213ENST00000620219 C8orf31Q8N9H6 132 aa12.55□□□□□ -0.4
CPSF1-213ENST00000620219 SSBP2P81877 361 aaPredicted RBP12.55□□□□□ -0.4
CPSF1-213ENST00000620219 MBD3L1Q8WWY6 194 aa12.55□□□□□ -0.4
CPSF1-213ENST00000620219 CRYBG3Q68DQ2 2970 aa12.55□□□□□ -0.4
CPSF1-213ENST00000620219 OOSP1A8MZH6 123 aa12.55□□□□□ -0.4
CPSF1-213ENST00000620219 DERL1Q9BUN8 251 aa12.55□□□□□ -0.4
CPSF1-213ENST00000620219 OR51M1Q9H341 326 aa12.55□□□□□ -0.4
CPSF1-213ENST00000620219 YAE1D1Q9NRH1 226 aa12.55□□□□□ -0.4
CPSF1-213ENST00000620219 SOX21Q9Y651 276 aaPredicted RBP12.55□□□□□ -0.4
CPSF1-213ENST00000620219 PGPA6NDG6 321 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 LY6G5BQ8NDX9 201 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 C8orf46Q8TAG6 207 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 RNF2Q99496 336 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 RNF5Q99942 180 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 A0A087X0M5 115 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 A0A1B0GX30 115 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 TCRBV4S1A1TA0A5B7 111 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 NAT8Q9UHE5 227 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 PRELID1Q9Y255 219 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 C15orf54Q8N8G6 183 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 HELTA6NFD8 242 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 ATP6V0E1O15342 81 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 GOSR1O95249 250 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 IGLV2-23P01705 113 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 PSG1P11464 419 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms