RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 DNAJC9-AS1A6NH13 148 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 ZFP92A6NM28 416 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 ATP6V1G1O75348 118 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 CLN5O75503 358 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 IGKV1-17P01599 117 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 CD99P14209 185 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 RHOGP84095 191 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 COMMD7Q86VX2 200 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 OR10G4Q8NGN3 311 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 OR10G9Q8NGN4 311 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 OR10G7Q8NGN6 311 aa11.13□□□□□ -0.63
USP39-220ENST00000613444 PSMB11A5LHX3 300 aa11.12□□□□□ -0.63
USP39-220ENST00000613444 ACOT6Q3I5F7 207 aaPredicted RBP11.12□□□□□ -0.63
USP39-220ENST00000613444 MBD3L1Q8WWY6 194 aa11.12□□□□□ -0.63
USP39-220ENST00000613444 SEC14L6B5MCN3 397 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 EIF3GO75821 320 aaKnown RBP eCLIP11.11□□□□□ -0.63
USP39-220ENST00000613444 IGLV1-40P01703 118 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 H2AFB1P0C5Y9 115 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 FCGR2BP31994 310 aaPredicted RBP11.11□□□□□ -0.63
USP39-220ENST00000613444 C15orf32Q32M92 178 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 Q8N2B8 174 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 NECAP1Q8NC96 275 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 VN1R17PQ8TDU5 208 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 PRSS22Q9GZN4 317 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 NPFFR1Q9GZQ6 430 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 C21orf62Q9NYP8 219 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 TRAV1-1A0A0B4J248 108 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 MFAP4P55083 255 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 SELENOTP62341 195 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 CCL20P78556 96 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 RBMS3Q6XE24 437 aaKnown RBP11.11□□□□□ -0.63
USP39-220ENST00000613444 MS4A10Q96PG2 267 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 ZNF355PQ9NSJ1 428 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 PFDN2Q9UHV9 154 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 CDC42EP3Q9UKI2 254 aa11.11□□□□□ -0.63
USP39-220ENST00000613444 H3BUA1 57 aa11.1□□□□□ -0.63
USP39-220ENST00000613444 FAM122CQ6P4D5 195 aa11.1□□□□□ -0.63
USP39-220ENST00000613444 ZNF502Q8TBZ5 544 aa11.1□□□□□ -0.63
USP39-220ENST00000613444 SFT2D1Q8WV19 159 aa11.1□□□□□ -0.63
USP39-220ENST00000613444 SLC25A22Q9H936 323 aa11.1□□□□□ -0.63
USP39-220ENST00000613444 CLDN34H7C241 214 aa11.1□□□□□ -0.63
USP39-220ENST00000613444 IGHV3-23P01764 117 aa11.1□□□□□ -0.63
USP39-220ENST00000613444 SRD5A1P18405 259 aa11.1□□□□□ -0.63
USP39-220ENST00000613444 NPBWR1P48145 328 aa11.1□□□□□ -0.63
USP39-220ENST00000613444 TIGITQ495A1 244 aa11.1□□□□□ -0.63
USP39-220ENST00000613444 EIF4E3Q8N5X7 224 aaKnown RBP11.1□□□□□ -0.63
USP39-220ENST00000613444 TMEM37Q8WXS4 190 aa11.1□□□□□ -0.63
USP39-220ENST00000613444 RAB24Q969Q5 203 aa11.1□□□□□ -0.63
USP39-220ENST00000613444 MARC2Q969Z3 335 aa11.1□□□□□ -0.63
USP39-220ENST00000613444 SCRT1Q9BWW7 348 aa11.1□□□□□ -0.63
USP39-220ENST00000613444 SEPSECSQ9HD40 501 aaKnown RBP11.1□□□□□ -0.63
USP39-220ENST00000613444 FN1P02751 2386 aaKnown RBP11.1□□□□□ -0.63
USP39-220ENST00000613444 CTXND1A0A1B0GTU2 59 aa11.09□□□□□ -0.63
USP39-220ENST00000613444 A0A1B0GV50 99 aa11.09□□□□□ -0.63
USP39-220ENST00000613444 CYSRT1A8MQ03 144 aa11.09□□□□□ -0.63
USP39-220ENST00000613444 LCN15Q6UWW0 184 aa11.09□□□□□ -0.63
USP39-220ENST00000613444 IL34Q6ZMJ4 242 aa11.09□□□□□ -0.63
USP39-220ENST00000613444 Q71RC1 249 aaPredicted RBP11.09□□□□□ -0.63
USP39-220ENST00000613444 ZNF414Q96IQ9 312 aa11.09□□□□□ -0.63
USP39-220ENST00000613444 CCDC140Q96MF4 163 aa11.09□□□□□ -0.63
USP39-220ENST00000613444 TXN2Q99757 166 aa11.09□□□□□ -0.63
USP39-220ENST00000613444 ACTR3CQ9C0K3 210 aaPredicted RBP11.09□□□□□ -0.63
USP39-220ENST00000613444 KLK15Q9H2R5 256 aa11.09□□□□□ -0.63
USP39-220ENST00000613444 F8P00451 2351 aa11.09□□□□□ -0.63
USP39-220ENST00000613444 CDC34P49427 236 aaPredicted RBP11.09□□□□□ -0.63
USP39-220ENST00000613444 SCGB2A2Q13296 93 aa11.09□□□□□ -0.63
USP39-220ENST00000613444 PATE2Q6UY27 113 aa11.09□□□□□ -0.63
USP39-220ENST00000613444 CITED4Q96RK1 184 aa11.09□□□□□ -0.63
USP39-220ENST00000613444 MAP1LC3B2A6NCE7 125 aa11.08□□□□□ -0.64
USP39-220ENST00000613444 FAM181BA6NEQ2 426 aa11.08□□□□□ -0.64
USP39-220ENST00000613444 FAM223BA6NKX1 122 aa11.08□□□□□ -0.64
USP39-220ENST00000613444 HMGB3O15347 200 aaKnown RBP11.08□□□□□ -0.64
USP39-220ENST00000613444 GNG7O60262 68 aa11.08□□□□□ -0.64
USP39-220ENST00000613444 IGHG4P01861 327 aa11.08□□□□□ -0.64
USP39-220ENST00000613444 TRGV3P03979 118 aa11.08□□□□□ -0.64
USP39-220ENST00000613444 CTSGP08311 255 aa11.08□□□□□ -0.64
USP39-220ENST00000613444 PSG1P11464 419 aa11.08□□□□□ -0.64
USP39-220ENST00000613444 FGF8P55075 233 aaPredicted RBP11.08□□□□□ -0.64
USP39-220ENST00000613444 PLP1P60201 277 aa11.08□□□□□ -0.64
USP39-220ENST00000613444 SPATA31B1PQ5VZV4 182 aa11.08□□□□□ -0.64
USP39-220ENST00000613444 FAM223AQ8IWN6 122 aa11.08□□□□□ -0.64
USP39-220ENST00000613444 MAP1LC3BQ9GZQ8 125 aa11.08□□□□□ -0.64
USP39-220ENST00000613444 TRAV30A0A087WSZ9 112 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 RAB19A4D1S5 217 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 NUDT19A8MXV4 375 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 INAFM1C9JVW0 142 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 OR5G3P0C626 314 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 ADMP35318 185 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 SRSF3P84103 164 aaKnown RBP11.07□□□□□ -0.64
USP39-220ENST00000613444 Q56UQ5 140 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 C10orf99Q6UWK7 81 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 ZNF329Q86UD4 541 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 SERTAD4Q9NUC0 356 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 OR2T8A6NH00 312 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 HBE1P02100 147 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 PSMB8P28062 276 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 YPEL3P61236 119 aaPredicted RBP11.07□□□□□ -0.64
USP39-220ENST00000613444 GATAD1Q8WUU5 269 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 CHRDL1Q9BU40 450 aa11.07□□□□□ -0.64
USP39-220ENST00000613444 C19orf24Q9BVV8 132 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms