RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 RERGLQ9H628 205 aa2.96□□□□□ -1.94
LINC00540-201ENST00000611481 PLGRKTQ9HBL7 147 aa2.96□□□□□ -1.94
LINC00540-201ENST00000611481 AIG1Q9NVV5 245 aa2.96□□□□□ -1.94
LINC00540-201ENST00000611481 CALML5Q9NZT1 146 aa2.96□□□□□ -1.94
LINC00540-201ENST00000611481 ANXA10Q9UJ72 324 aa2.96□□□□□ -1.94
LINC00540-201ENST00000611481 RAB22AQ9UL26 194 aa2.96□□□□□ -1.94
LINC00540-201ENST00000611481 V9GYQ6 96 aa2.96□□□□□ -1.94
LINC00540-201ENST00000611481 IGLV7-46A0A075B6I9 117 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 TINCRA0A1B0GVN0 87 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 PGRMC1O00264 195 aaKnown RBP2.95□□□□□ -1.94
LINC00540-201ENST00000611481 TCAPO15273 167 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 ZNF780AO75290 641 aaPredicted RBP2.95□□□□□ -1.94
LINC00540-201ENST00000611481 SLC22A5O76082 557 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 KBTBD11O94819 623 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 DUSP14O95147 198 aaKnown RBP2.95□□□□□ -1.94
LINC00540-201ENST00000611481 NDUFB2O95178 105 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 P0C879 139 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 CDK2P24941 298 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 CBX5P45973 191 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 OMPP47874 163 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 GNG10P50151 68 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 TPPP2P59282 170 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 TAS2R19P59542 299 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 MEF2CQ06413 473 aaPredicted RBP2.95□□□□□ -1.94
LINC00540-201ENST00000611481 ZSCAN26Q16670 478 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 SMIM21Q3B7S5 101 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 SPIN3Q5JUX0 258 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 LEMD1Q68G75 181 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 GAPTQ8N292 157 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 Q8N6K4 173 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 OR2G3Q8NGZ4 309 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 OR2T10Q8NGZ9 312 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 TESCQ96BS2 214 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 TLCD1Q96CP7 247 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 L3HYPDHQ96EM0 354 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 Q96MT0 163 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 TEAD3Q99594 435 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 KIR2DL4Q99706 377 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 EBF4Q9BQW3 602 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 TMEM208Q9BTX3 173 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 POLR2J2Q9GZM3 115 aaKnown RBP2.95□□□□□ -1.94
LINC00540-201ENST00000611481 POLR2J3Q9H1A7 115 aaKnown RBP2.95□□□□□ -1.94
LINC00540-201ENST00000611481 MED4Q9NPJ6 270 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 C12orf4Q9NQ89 552 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 DIABLOQ9NR28 239 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 SLC2A9Q9NRM0 540 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 PLSCR3Q9NRY6 295 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 TP53TG3Q9ULZ0 132 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 LHFPL6Q9Y693 200 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 LPAP08519 4548 aa2.95□□□□□ -1.94
LINC00540-201ENST00000611481 DAPL1A0PJW8 107 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 M0R135 149 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 SOCS3O14543 225 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 CHP2O43745 196 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 DCTN3O75935 186 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 IGHV3-48P01763 117 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 TYMSP04818 313 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 IL6P05231 212 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 FABP1P07148 127 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 MRPL3P09001 348 aaKnown RBP2.94□□□□□ -1.94
LINC00540-201ENST00000611481 DNAH10OSP0CZ25 163 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 MT1HL1P0DM35 61 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 FUT3P21217 361 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 PSMB9P28065 219 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 BLVRBP30043 206 aaPredicted RBP2.94□□□□□ -1.94
LINC00540-201ENST00000611481 HIST1H3AP68431 136 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 PRR3P79522 188 aaKnown RBP2.94□□□□□ -1.94
LINC00540-201ENST00000611481 BAXQ07812 192 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 EBI3Q14213 229 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 CDNFQ49AH0 187 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 HIST2H3PS2Q5TEC6 136 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 ZNF660Q6AZW8 331 aaPredicted RBP2.94□□□□□ -1.94
LINC00540-201ENST00000611481 HIST2H3AQ71DI3 136 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 FAM220AQ7Z4H9 259 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 UBAC2Q8NBM4 344 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 STOML3Q8TAV4 291 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 GALNT14Q96FL9 552 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 ZNF799Q96GE5 643 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 RNF185Q96GF1 192 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 FAM19A4Q96LR4 140 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 ZNF184Q99676 751 aaPredicted RBP2.94□□□□□ -1.94
LINC00540-201ENST00000611481 GABARAPL3Q9BY60 117 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 SLIRPQ9GZT3 109 aaKnown RBP2.94□□□□□ -1.94
LINC00540-201ENST00000611481 FGF23Q9GZV9 251 aaPredicted RBP2.94□□□□□ -1.94
LINC00540-201ENST00000611481 METTL9Q9H1A3 318 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 Q9H3A6 140 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 DNAJC27Q9NZQ0 273 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 DHRS4-AS1Q9P1J3 65 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 MTFP1Q9UDX5 166 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 CACNG5Q9UF02 275 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 VAX2Q9UIW0 290 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 AMMECR1Q9Y4X0 333 aaPredicted RBP2.94□□□□□ -1.94
LINC00540-201ENST00000611481 LINC00312Q9Y6C7 94 aa2.94□□□□□ -1.94
LINC00540-201ENST00000611481 DNAH8Q96JB1 4490 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 CPSF4LA6NMK7 179 aaKnown RBP2.93□□□□□ -1.94
LINC00540-201ENST00000611481 A8MU10 97 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 H0Y9J4 135 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 J3QT63 122 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 XKRYO14609 159 aa2.93□□□□□ -1.94
LINC00540-201ENST00000611481 AZIN1O14977 448 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms