RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 SMPXQ9UHP9 88 aa14.6□□□□□ -0.07
UPF1-212ENST00000601689 ADAP1O75689 374 aa14.59□□□□□ -0.07
UPF1-212ENST00000601689 FABP1P07148 127 aa14.59□□□□□ -0.07
UPF1-212ENST00000601689 IAPPP10997 89 aa14.59□□□□□ -0.07
UPF1-212ENST00000601689 NPPCP23582 126 aa14.59□□□□□ -0.07
UPF1-212ENST00000601689 OR10J1P30954 320 aa14.59□□□□□ -0.07
UPF1-212ENST00000601689 DEFA1P59665 94 aa14.59□□□□□ -0.07
UPF1-212ENST00000601689 DEFA3P59666 94 aa14.59□□□□□ -0.07
UPF1-212ENST00000601689 ASAH1Q13510 395 aa14.59□□□□□ -0.07
UPF1-212ENST00000601689 PRSS54Q6PEW0 395 aa14.59□□□□□ -0.07
UPF1-212ENST00000601689 ACY3Q96HD9 319 aa14.59□□□□□ -0.07
UPF1-212ENST00000601689 METTL26Q96S19 204 aa14.59□□□□□ -0.07
UPF1-212ENST00000601689 ASCL2Q99929 193 aa14.59□□□□□ -0.07
UPF1-212ENST00000601689 OR11H12B2RN74 326 aa14.58□□□□□ -0.08
UPF1-212ENST00000601689 TSPAN4O14817 238 aa14.58□□□□□ -0.08
UPF1-212ENST00000601689 CMC4P56277 68 aaPredicted RBP14.58□□□□□ -0.08
UPF1-212ENST00000601689 NPIPB3Q92617 1050 aa14.58□□□□□ -0.08
UPF1-212ENST00000601689 RHPN1-AS1Q9BWJ2 59 aa14.58□□□□□ -0.08
UPF1-212ENST00000601689 OR4C46A6NHA9 309 aa14.57□□□□□ -0.08
UPF1-212ENST00000601689 EIF2B2P49770 351 aaKnown RBP14.57□□□□□ -0.08
UPF1-212ENST00000601689 YPEL3P61236 119 aaPredicted RBP14.57□□□□□ -0.08
UPF1-212ENST00000601689 IAH1Q2TAA2 248 aaPredicted RBP14.57□□□□□ -0.08
UPF1-212ENST00000601689 ZNF431Q8TF32 576 aaPredicted RBP14.57□□□□□ -0.08
UPF1-212ENST00000601689 GRAMD2BQ96HH9 432 aa14.57□□□□□ -0.08
UPF1-212ENST00000601689 MAGT1Q9H0U3 335 aa14.57□□□□□ -0.08
UPF1-212ENST00000601689 GPN1Q9HCN4 374 aaPredicted RBP14.57□□□□□ -0.08
UPF1-212ENST00000601689 PFDN2Q9UHV9 154 aa14.57□□□□□ -0.08
UPF1-212ENST00000601689 STRAPQ9Y3F4 350 aaKnown RBP14.57□□□□□ -0.08
UPF1-212ENST00000601689 ZFP92A6NM28 416 aa14.56□□□□□ -0.08
UPF1-212ENST00000601689 CHEK1O14757 476 aa14.56□□□□□ -0.08
UPF1-212ENST00000601689 SCGB1D2O95969 90 aa14.56□□□□□ -0.08
UPF1-212ENST00000601689 CD7P09564 240 aa14.56□□□□□ -0.08
UPF1-212ENST00000601689 ID3Q02535 119 aa14.56□□□□□ -0.08
UPF1-212ENST00000601689 TIGITQ495A1 244 aa14.56□□□□□ -0.08
UPF1-212ENST00000601689 SPANXN5Q5MJ07 72 aa14.56□□□□□ -0.08
UPF1-212ENST00000601689 GSKIPQ9P0R6 139 aa14.56□□□□□ -0.08
UPF1-212ENST00000601689 SELENOKQ9Y6D0 94 aa14.56□□□□□ -0.08
UPF1-212ENST00000601689 IGLC1P0CG04 106 aa14.55□□□□□ -0.08
UPF1-212ENST00000601689 RD3LP0DJH9 198 aa14.55□□□□□ -0.08
UPF1-212ENST00000601689 RPL11P62913 178 aaKnown RBP14.55□□□□□ -0.08
UPF1-212ENST00000601689 C19orf73Q9NVV2 129 aa14.55□□□□□ -0.08
UPF1-212ENST00000601689 MRPL36Q9P0J6 103 aaKnown RBP14.55□□□□□ -0.08
UPF1-212ENST00000601689 U3KQK5 164 aa14.55□□□□□ -0.08
UPF1-212ENST00000601689 IGHV3-49A0A0A0MS15 119 aa14.54□□□□□ -0.08
UPF1-212ENST00000601689 C5orf51A6NDU8 294 aa14.54□□□□□ -0.08
UPF1-212ENST00000601689 FAM25EA8MYX2 175 aa14.54□□□□□ -0.08
UPF1-212ENST00000601689 SBSPONQ8IVN8 264 aa14.54□□□□□ -0.08
UPF1-212ENST00000601689 C12orf45Q8N5I9 185 aaPredicted RBP14.54□□□□□ -0.08
UPF1-212ENST00000601689 TMEM170AQ8WVE7 144 aa14.54□□□□□ -0.08
UPF1-212ENST00000601689 RAB40CQ96S21 281 aa14.54□□□□□ -0.08
UPF1-212ENST00000601689 RNF2Q99496 336 aa14.54□□□□□ -0.08
UPF1-212ENST00000601689 ZFAND3Q9H8U3 227 aa14.54□□□□□ -0.08
UPF1-212ENST00000601689 PSENENQ9NZ42 101 aa14.54□□□□□ -0.08
UPF1-212ENST00000601689 TBC1D24Q9ULP9 559 aa14.54□□□□□ -0.08
UPF1-212ENST00000601689 DNASE2O00115 360 aaPredicted RBP14.53□□□□□ -0.08
UPF1-212ENST00000601689 SSSCA1O60232 199 aa14.53□□□□□ -0.08
UPF1-212ENST00000601689 TOMM40O96008 361 aa14.53□□□□□ -0.08
UPF1-212ENST00000601689 IGKV1-17P01599 117 aa14.53□□□□□ -0.08
UPF1-212ENST00000601689 NUP62P37198 522 aaPredicted RBP14.53□□□□□ -0.08
UPF1-212ENST00000601689 POLR2GP62487 172 aaKnown RBP eCLIP14.53□□□□□ -0.08
UPF1-212ENST00000601689 OR4D5Q8NGN0 318 aa14.53□□□□□ -0.08
UPF1-212ENST00000601689 SRD5A3Q9H8P0 318 aa14.53□□□□□ -0.08
UPF1-212ENST00000601689 MPTX1A8MV57 137 aa14.52□□□□□ -0.09
UPF1-212ENST00000601689 L7N2F9 121 aa14.52□□□□□ -0.09
UPF1-212ENST00000601689 IL4P05112 153 aa14.52□□□□□ -0.09
UPF1-212ENST00000601689 IL5P05113 134 aa14.52□□□□□ -0.09
UPF1-212ENST00000601689 S100A7P31151 101 aa14.52□□□□□ -0.09
UPF1-212ENST00000601689 VAMP2P63027 116 aa14.52□□□□□ -0.09
UPF1-212ENST00000601689 GAMTQ14353 236 aa14.52□□□□□ -0.09
UPF1-212ENST00000601689 GSG1LQ6UXU4 331 aa14.52□□□□□ -0.09
UPF1-212ENST00000601689 TCF24Q7RTU0 167 aa14.52□□□□□ -0.09
UPF1-212ENST00000601689 DEFB125Q8N687 156 aa14.52□□□□□ -0.09
UPF1-212ENST00000601689 ZBTB8BQ8NAP8 495 aaPredicted RBP14.52□□□□□ -0.09
UPF1-212ENST00000601689 OR51G1Q8NGK1 321 aa14.52□□□□□ -0.09
UPF1-212ENST00000601689 VSIRQ9H7M9 311 aa14.52□□□□□ -0.09
UPF1-212ENST00000601689 IGHV3OR16-13A0A075B7E8 117 aa14.51□□□□□ -0.09
UPF1-212ENST00000601689 IGHV3-74A0A0B4J1X5 117 aa14.51□□□□□ -0.09
UPF1-212ENST00000601689 CFDP00746 253 aaPredicted RBP14.51□□□□□ -0.09
UPF1-212ENST00000601689 HNRNPCP07910 306 aaKnown RBP eCLIP14.51□□□□□ -0.09
UPF1-212ENST00000601689 PVALBP20472 110 aaPredicted RBP14.51□□□□□ -0.09
UPF1-212ENST00000601689 AP2S1P53680 142 aaPredicted RBP14.51□□□□□ -0.09
UPF1-212ENST00000601689 C11orf87Q6NUJ2 197 aa14.51□□□□□ -0.09
UPF1-212ENST00000601689 ST8SIA2Q92186 375 aa14.51□□□□□ -0.09
UPF1-212ENST00000601689 SMIM8Q96KF7 97 aa14.51□□□□□ -0.09
UPF1-212ENST00000601689 SPATA25Q9BR10 227 aa14.51□□□□□ -0.09
UPF1-212ENST00000601689 SEC22CQ9BRL7 303 aa14.51□□□□□ -0.09
UPF1-212ENST00000601689 RABAC1Q9UI14 185 aa14.51□□□□□ -0.09
UPF1-212ENST00000601689 IGKV3-7A0A075B6H7 116 aa14.5□□□□□ -0.09
UPF1-212ENST00000601689 SNRPGP15A8MWD9 76 aa14.5□□□□□ -0.09
UPF1-212ENST00000601689 H3BP45 60 aa14.5□□□□□ -0.09
UPF1-212ENST00000601689 PRAF2O60831 178 aa14.5□□□□□ -0.09
UPF1-212ENST00000601689 CRYBB3P26998 211 aa14.5□□□□□ -0.09
UPF1-212ENST00000601689 TAS2R30P59541 319 aa14.5□□□□□ -0.09
UPF1-212ENST00000601689 FAM110AQ9BQ89 295 aa14.5□□□□□ -0.09
UPF1-212ENST00000601689 HELTA6NFD8 242 aa14.49□□□□□ -0.09
UPF1-212ENST00000601689 PSG1P11464 419 aa14.49□□□□□ -0.09
UPF1-212ENST00000601689 AKR1C1Q04828 323 aa14.49□□□□□ -0.09
UPF1-212ENST00000601689 OR10P1Q8NGE3 313 aa14.49□□□□□ -0.09
UPF1-212ENST00000601689 C2orf50Q96LR7 162 aa14.49□□□□□ -0.09
UPF1-212ENST00000601689 WWC2-AS2Q96NR7 200 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms