RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 TMEM183AQ8IXX5 376 aa9.37□□□□□ -0.91
VRK3-223ENST00000601341 GATAD1Q8WUU5 269 aa9.37□□□□□ -0.91
VRK3-223ENST00000601341 CSMD1Q96PZ7 3565 aa9.37□□□□□ -0.91
VRK3-223ENST00000601341 IGHV3-72A0A0B4J1Y9 119 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 IGHV1-69DA0A0B4J2H0 117 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 A0A1W2PPI3 338 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 C9JCJ5 164 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 TIMM23O14925 209 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 CA2P00918 260 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 IGHV1-69P01742 117 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 SAA4P35542 130 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 LGALS7P47929 136 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 RPS16P62249 146 aaKnown RBP9.36□□□□□ -0.91
VRK3-223ENST00000601341 MIC13Q5XKP0 118 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 STPG3Q8N7X2 389 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 OR4X1Q8NH49 305 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 VSTM2AQ8TAG5 236 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 HARBI1Q96MB7 349 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 PRRC2AP48634 2157 aaKnown RBP9.36□□□□□ -0.91
VRK3-223ENST00000601341 PDZD2O15018 2839 aa9.36□□□□□ -0.91
VRK3-223ENST00000601341 GCHFRP30047 84 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 GPX4P36969 197 aaPredicted RBP9.35□□□□□ -0.91
VRK3-223ENST00000601341 PYY3Q5JQD4 70 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 GCSAMLQ5JQS6 135 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 ACTL10Q5JWF8 245 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 CST9LP1Q5W188 147 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 CYB5R2Q6BCY4 276 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 UHRF2Q96PU4 802 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 TMEM167BQ9NRX6 74 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 SLC45A2Q9UMX9 530 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 TRAV40A0A0B4J280 105 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 SRRM4A7MD48 611 aaKnown RBP9.35□□□□□ -0.91
VRK3-223ENST00000601341 NDUFB4O95168 129 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 HIST1H1BP16401 226 aaKnown RBP9.35□□□□□ -0.91
VRK3-223ENST00000601341 ATP5G3P48201 142 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 PQLC2Q6ZP29 291 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 PIP4P2Q8N4L2 257 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 RNF2Q99496 336 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 RNF5Q99942 180 aa9.35□□□□□ -0.91
VRK3-223ENST00000601341 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.34□□□□□ -0.912e-6■■■■□ 21.2
VRK3-223ENST00000601341 CFHR4Q92496 578 aa9.34□□□□□ -0.91
VRK3-223ENST00000601341 SFRP2Q96HF1 295 aa9.34□□□□□ -0.91
VRK3-223ENST00000601341 AJUBAQ96IF1 538 aa9.34□□□□□ -0.91
VRK3-223ENST00000601341 IGHV3OR16-10A0A075B7F0 116 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 TEX50A0A1B0GTY4 177 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 A0A1W2PN81 502 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 LINC00869P0C866 280 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 SAA1P0DJI8 122 aaPredicted RBP9.33□□□□□ -0.92
VRK3-223ENST00000601341 IGHV4-38-2P0DP08 117 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 CHRNA7P36544 502 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 TAS2R45P59539 299 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 VMA21Q3ZAQ7 101 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 DYNAPQ8N1N2 210 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 OR10D4PQ8NGN7 298 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 OR1P1Q8NH06 330 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 OR5R1Q8NH85 324 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 PFDN5Q99471 154 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 MRPL32Q9BYC8 188 aaKnown RBP9.33□□□□□ -0.92
VRK3-223ENST00000601341 GPR61Q9BZJ8 451 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 NDUFA4L2Q9NRX3 87 aa9.33□□□□□ -0.92
VRK3-223ENST00000601341 NOTCH2Q04721 2471 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 MDFIC2A0A1B0GVS7 189 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 A0A1W2PPQ1 181 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 LINC00587B1AMM8 73 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 MOSP00540 346 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 AVPP01185 164 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 IGLV2-23P01705 113 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 OR5G3P0C626 314 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 DEFA4P12838 97 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 BRS3P32247 399 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 BPIFB3P59826 476 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 ERHP84090 104 aaKnown RBP9.32□□□□□ -0.92
VRK3-223ENST00000601341 RUSC1-AS1Q66K80 236 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 BRD3OSQ6XYD6 125 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 CIARTQ8N365 385 aaPredicted RBP9.32□□□□□ -0.92
VRK3-223ENST00000601341 TMEM167AQ8TBQ9 72 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 PACRGQ96M98 296 aaPredicted RBP9.32□□□□□ -0.92
VRK3-223ENST00000601341 HIST1H2BLQ99880 126 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 SEPSECSQ9HD40 501 aaKnown RBP9.32□□□□□ -0.92
VRK3-223ENST00000601341 TECRQ9NZ01 308 aaKnown RBP9.32□□□□□ -0.92
VRK3-223ENST00000601341 FUT9Q9Y231 359 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 RNASE2P10153 161 aaKnown RBP9.32□□□□□ -0.92
VRK3-223ENST00000601341 UBE2G2P60604 165 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 RPL8P62917 257 aaKnown RBP9.32□□□□□ -0.92
VRK3-223ENST00000601341 CD69Q07108 199 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 KLF17Q5JT82 389 aaPredicted RBP9.32□□□□□ -0.92
VRK3-223ENST00000601341 MRPL41Q8IXM3 137 aaKnown RBP9.32□□□□□ -0.92
VRK3-223ENST00000601341 TEX45Q8NA69 505 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 SSMEM1Q8WWF3 244 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 RITA1Q96K30 269 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 COMMD5Q9GZQ3 224 aa9.32□□□□□ -0.92
VRK3-223ENST00000601341 TRBV20OR9-2A0A075B6H5 130 aa9.31□□□□□ -0.92
VRK3-223ENST00000601341 SMAD7O15105 426 aaKnown RBP9.31□□□□□ -0.92
VRK3-223ENST00000601341 SLC25A17O43808 307 aa9.31□□□□□ -0.92
VRK3-223ENST00000601341 OR10J4P0C629 311 aa9.31□□□□□ -0.92
VRK3-223ENST00000601341 FAM106CPP0CH98 169 aa9.31□□□□□ -0.92
VRK3-223ENST00000601341 SUB1P53999 127 aaKnown RBP eCLIP9.31□□□□□ -0.92
VRK3-223ENST00000601341 RPL15P61313 204 aaKnown RBP9.31□□□□□ -0.92
VRK3-223ENST00000601341 RPL19P84098 196 aaKnown RBP9.31□□□□□ -0.92
VRK3-223ENST00000601341 HES1Q14469 280 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms