RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 SLC25A10Q9UBX3 287 aaPredicted RBP14.91□□□□□ -0.02
UPF1-210ENST00000600689 SLC25A2Q9BXI2 301 aa14.91□□□□□ -0.02
UPF1-210ENST00000600689 DDB2Q92466 427 aa14.9□□□□□ -0.02
UPF1-210ENST00000600689 PAXXQ9BUH6 204 aa14.9□□□□□ -0.02
UPF1-210ENST00000600689 FOXA2Q9Y261 457 aaPredicted RBP14.9□□□□□ -0.02
UPF1-210ENST00000600689 MRPS16Q9Y3D3 137 aaKnown RBP14.9□□□□□ -0.02
UPF1-210ENST00000600689 TEX50A0A1B0GTY4 177 aa14.9□□□□□ -0.02
UPF1-210ENST00000600689 C2orf70A6NJV1 201 aa14.9□□□□□ -0.02
UPF1-210ENST00000600689 E7EUB6 86 aa14.9□□□□□ -0.02
UPF1-210ENST00000600689 NPIPB3Q92617 1050 aa14.9□□□□□ -0.02
UPF1-210ENST00000600689 TMEM70Q9BUB7 260 aa14.9□□□□□ -0.02
UPF1-210ENST00000600689 GAL3ST2Q9H3Q3 398 aa14.9□□□□□ -0.02
UPF1-210ENST00000600689 BSNQ9UPA5 3926 aa14.89□□□□□ -0.03
UPF1-210ENST00000600689 SLC25A5P05141 298 aaKnown RBP14.89□□□□□ -0.03
UPF1-210ENST00000600689 AARDQ4LEZ3 155 aa14.89□□□□□ -0.03
UPF1-210ENST00000600689 AMMECR1LQ6DCA0 310 aa14.89□□□□□ -0.03
UPF1-210ENST00000600689 INO80CQ6PI98 192 aaPredicted RBP14.89□□□□□ -0.03
UPF1-210ENST00000600689 PPP1R35Q8TAP8 253 aa14.89□□□□□ -0.03
UPF1-210ENST00000600689 GVINP1Q7Z2Y8 2422 aa14.89□□□□□ -0.03
UPF1-210ENST00000600689 A0A087X0K7 114 aa14.89□□□□□ -0.03
UPF1-210ENST00000600689 ZNF891A8MT65 544 aaPredicted RBP14.89□□□□□ -0.03
UPF1-210ENST00000600689 PEX7O00628 323 aa14.89□□□□□ -0.03
UPF1-210ENST00000600689 MOSP00540 346 aa14.89□□□□□ -0.03
UPF1-210ENST00000600689 OR8B3Q8NGG8 313 aa14.89□□□□□ -0.03
UPF1-210ENST00000600689 CCL13Q99616 98 aa14.89□□□□□ -0.03
UPF1-210ENST00000600689 IGHV1-69-2A0A0G2JMI3 117 aa14.89□□□□□ -0.03
UPF1-210ENST00000600689 ITLN1Q8WWA0 313 aa14.89□□□□□ -0.03
UPF1-210ENST00000600689 NAA38Q9BRA0 125 aaKnown RBP14.89□□□□□ -0.03
UPF1-210ENST00000600689 DMXL2Q8TDJ6 3036 aa14.88□□□□□ -0.03
UPF1-210ENST00000600689 SAA1P0DJI8 122 aaPredicted RBP14.88□□□□□ -0.03
UPF1-210ENST00000600689 C17orf58Q2M2W7 97 aa14.88□□□□□ -0.03
UPF1-210ENST00000600689 FAM216BQ8N7L0 139 aa14.88□□□□□ -0.03
UPF1-210ENST00000600689 URB1-AS1Q96HZ7 61 aa14.88□□□□□ -0.03
UPF1-210ENST00000600689 A0A1W2PRE2 83 aa14.88□□□□□ -0.03
UPF1-210ENST00000600689 FAM90A9PA6NNJ1 464 aa14.88□□□□□ -0.03
UPF1-210ENST00000600689 COX19Q49B96 90 aa14.88□□□□□ -0.03
UPF1-210ENST00000600689 SAPCD1Q5SSQ6 148 aa14.88□□□□□ -0.03
UPF1-210ENST00000600689 H0YJW9 148 aa14.87□□□□□ -0.03
UPF1-210ENST00000600689 LINC00322Q6ZN03 302 aaPredicted RBP14.87□□□□□ -0.03
UPF1-210ENST00000600689 MUC15Q8N387 334 aa14.87□□□□□ -0.03
UPF1-210ENST00000600689 RBMXL3Q8N7X1 1067 aaKnown RBP14.87□□□□□ -0.03
UPF1-210ENST00000600689 FAM167A-AS1Q96KT0 104 aa14.87□□□□□ -0.03
UPF1-210ENST00000600689 COMMD5Q9GZQ3 224 aa14.87□□□□□ -0.03
UPF1-210ENST00000600689 IGHV2-70DA0A0C4DH43 119 aa14.87□□□□□ -0.03
UPF1-210ENST00000600689 PGPA6NDG6 321 aa14.87□□□□□ -0.03
UPF1-210ENST00000600689 TOMM40O96008 361 aa14.87□□□□□ -0.03
UPF1-210ENST00000600689 DEFB109BQ30KR1 87 aa14.87□□□□□ -0.03
UPF1-210ENST00000600689 C10orf113Q5VZT2 155 aa14.87□□□□□ -0.03
UPF1-210ENST00000600689 Q6ZT83 130 aa14.87□□□□□ -0.03
UPF1-210ENST00000600689 Q71RC1 249 aaPredicted RBP14.87□□□□□ -0.03
UPF1-210ENST00000600689 LEPROTL1O95214 131 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 FOXE3Q13461 319 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 C9orf106Q8NAJ2 232 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 MRPL27Q9P0M9 148 aaKnown RBP14.86□□□□□ -0.03
UPF1-210ENST00000600689 PRNDQ9UKY0 176 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 SRRM5B3KS81 715 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 RNASE2P10153 161 aaKnown RBP14.86□□□□□ -0.03
UPF1-210ENST00000600689 UQCRFS1P47985 274 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 PRCDQ00LT1 54 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 OR1B1Q8NGR6 318 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 GRAMD2BQ96HH9 432 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 TPPP3Q9BW30 176 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 MRPL36Q9P0J6 103 aaKnown RBP14.86□□□□□ -0.03
UPF1-210ENST00000600689 DSCAMO60469 2012 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 M0R1B8 84 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 UPK2O00526 184 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 ANKRD39Q53RE8 183 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 ZNF329Q86UD4 541 aa14.86□□□□□ -0.03
UPF1-210ENST00000600689 TRAV8-1A0A0A6YYK1 113 aa14.85□□□□□ -0.03
UPF1-210ENST00000600689 IGHV1-18A0A0C4DH31 117 aa14.85□□□□□ -0.03
UPF1-210ENST00000600689 KIR2DS2P43631 304 aa14.85□□□□□ -0.03
UPF1-210ENST00000600689 PRB3Q04118 309 aaPredicted RBP14.85□□□□□ -0.03
UPF1-210ENST00000600689 CD69Q07108 199 aa14.85□□□□□ -0.03
UPF1-210ENST00000600689 HARBI1Q96MB7 349 aa14.85□□□□□ -0.03
UPF1-210ENST00000600689 J3QW42 95 aa14.85□□□□□ -0.03
UPF1-210ENST00000600689 CT45A6P0DMU7 189 aa14.85□□□□□ -0.03
UPF1-210ENST00000600689 CT45A5P0DMU8 189 aa14.85□□□□□ -0.03
UPF1-210ENST00000600689 CT45A7P0DMV0 189 aa14.85□□□□□ -0.03
UPF1-210ENST00000600689 HCP5Q6MZN7 132 aa14.85□□□□□ -0.03
UPF1-210ENST00000600689 ZNF835Q9Y2P0 537 aa14.85□□□□□ -0.03
UPF1-210ENST00000600689 IGKV3-15P01624 115 aa14.84□□□□□ -0.03
UPF1-210ENST00000600689 IGHG3P01860 377 aa14.84□□□□□ -0.03
UPF1-210ENST00000600689 APOA2P02652 100 aa14.84□□□□□ -0.03
UPF1-210ENST00000600689 KIR2DL2P43627 348 aaPredicted RBP14.84□□□□□ -0.03
UPF1-210ENST00000600689 LINC00305Q7Z4B0 112 aa14.84□□□□□ -0.03
UPF1-210ENST00000600689 MBD6Q96DN6 1003 aa14.84□□□□□ -0.03
UPF1-210ENST00000600689 SPTBN2O15020 2390 aa14.84□□□□□ -0.03
UPF1-210ENST00000600689 IGHV1-24A0A0C4DH33 117 aa14.84□□□□□ -0.03
UPF1-210ENST00000600689 F2RL2O00254 374 aa14.84□□□□□ -0.03
UPF1-210ENST00000600689 CDKN1BP46527 198 aa14.84□□□□□ -0.03
UPF1-210ENST00000600689 PATE2Q6UY27 113 aa14.84□□□□□ -0.03
UPF1-210ENST00000600689 FNDC4Q9H6D8 234 aaPredicted RBP14.84□□□□□ -0.03
UPF1-210ENST00000600689 HSBP1L1C9JCN9 74 aa14.84□□□□□ -0.03
UPF1-210ENST00000600689 TAX1BP3O14907 124 aa14.84□□□□□ -0.03
UPF1-210ENST00000600689 TMEM177Q53S58 311 aa14.84□□□□□ -0.03
UPF1-210ENST00000600689 FLYWCH2Q96CP2 140 aaKnown RBP14.84□□□□□ -0.03
UPF1-210ENST00000600689 GSX1Q9H4S2 264 aaPredicted RBP14.84□□□□□ -0.03
UPF1-210ENST00000600689 KBTBD11-OT1A0A1B0GTJ5 212 aa14.83□□□□□ -0.04
UPF1-210ENST00000600689 SYS1-DBNDD2H3BUS1 97 aa14.83□□□□□ -0.04
UPF1-210ENST00000600689 RTL8BQ17RB0 113 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms