RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 Q6ZRG5 221 aa11.89□□□□□ -0.51
TRIM28-209ENST00000597423 CYP2G1PQ6ZSU1 146 aa11.89□□□□□ -0.51
TRIM28-209ENST00000597423 ZNF329Q86UD4 541 aa11.89□□□□□ -0.51
TRIM28-209ENST00000597423 MGST2Q99735 147 aa11.89□□□□□ -0.51
TRIM28-209ENST00000597423 RSG1Q9BU20 258 aa11.89□□□□□ -0.51
TRIM28-209ENST00000597423 SLC45A2Q9UMX9 530 aa11.89□□□□□ -0.51
TRIM28-209ENST00000597423 RGS13O14921 159 aa11.88□□□□□ -0.51
TRIM28-209ENST00000597423 PSMB8P28062 276 aa11.88□□□□□ -0.51
TRIM28-209ENST00000597423 SPSB3Q6PJ21 355 aa11.88□□□□□ -0.51
TRIM28-209ENST00000597423 DPPA3Q6W0C5 159 aa11.88□□□□□ -0.51
TRIM28-209ENST00000597423 OR4X2Q8NGF9 303 aa11.88□□□□□ -0.51
TRIM28-209ENST00000597423 ZNF502Q8TBZ5 544 aa11.88□□□□□ -0.51
TRIM28-209ENST00000597423 C19orf24Q9BVV8 132 aa11.88□□□□□ -0.51
TRIM28-209ENST00000597423 GGTLC1Q9BX51 225 aa11.88□□□□□ -0.51
TRIM28-209ENST00000597423 SH3BGRL3Q9H299 93 aa11.88□□□□□ -0.51
TRIM28-209ENST00000597423 PXMP4Q9Y6I8 212 aa11.88□□□□□ -0.51
TRIM28-209ENST00000597423 MFSD2BA6NFX1 497 aa11.87□□□□□ -0.51
TRIM28-209ENST00000597423 CLEC3BP05452 202 aa11.87□□□□□ -0.51
TRIM28-209ENST00000597423 RD3LP0DJH9 198 aa11.87□□□□□ -0.51
TRIM28-209ENST00000597423 SULT1A2P50226 295 aa11.87□□□□□ -0.51
TRIM28-209ENST00000597423 YPEL3P61236 119 aaPredicted RBP11.87□□□□□ -0.51
TRIM28-209ENST00000597423 FFAR4Q5NUL3 377 aa11.87□□□□□ -0.51
TRIM28-209ENST00000597423 PXDC1Q5TGL8 231 aa11.87□□□□□ -0.51
TRIM28-209ENST00000597423 TMEM182Q6ZP80 229 aaPredicted RBP11.87□□□□□ -0.51
TRIM28-209ENST00000597423 S100A7AQ86SG5 101 aa11.87□□□□□ -0.51
TRIM28-209ENST00000597423 KLHDC1Q8N7A1 406 aa11.87□□□□□ -0.51
TRIM28-209ENST00000597423 BPIFCQ8NFQ6 507 aa11.87□□□□□ -0.51
TRIM28-209ENST00000597423 OR5AU1Q8NGC0 362 aa11.87□□□□□ -0.51
TRIM28-209ENST00000597423 Q8WTZ3 238 aa11.87□□□□□ -0.51
TRIM28-209ENST00000597423 SLC39A9Q9NUM3 307 aa11.87□□□□□ -0.51
TRIM28-209ENST00000597423 MRPL36Q9P0J6 103 aaKnown RBP11.87□□□□□ -0.51
TRIM28-209ENST00000597423 A0A1B0GUS0 222 aa11.86□□□□□ -0.51
TRIM28-209ENST00000597423 IGLC1P0CG04 106 aa11.86□□□□□ -0.51
TRIM28-209ENST00000597423 S100A7P31151 101 aa11.86□□□□□ -0.51
TRIM28-209ENST00000597423 B2MP61769 119 aa11.86□□□□□ -0.51
TRIM28-209ENST00000597423 BLOC1S1P78537 153 aa11.86□□□□□ -0.51
TRIM28-209ENST00000597423 RELQ04864 619 aaPredicted RBP11.86□□□□□ -0.51
TRIM28-209ENST00000597423 ZNF616Q08AN1 781 aa11.86□□□□□ -0.51
TRIM28-209ENST00000597423 TMEM41BQ5BJD5 291 aa11.86□□□□□ -0.51
TRIM28-209ENST00000597423 STPG3Q8N7X2 389 aa11.86□□□□□ -0.51
TRIM28-209ENST00000597423 RNF152Q8N8N0 203 aa11.86□□□□□ -0.51
TRIM28-209ENST00000597423 OR1L4Q8NGR5 311 aa11.86□□□□□ -0.51
TRIM28-209ENST00000597423 SAT2Q96F10 170 aaPredicted RBP11.86□□□□□ -0.51
TRIM28-209ENST00000597423 KLK15Q9H2R5 256 aa11.86□□□□□ -0.51
TRIM28-209ENST00000597423 IGKV1D-37A0A075B6S9 117 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 IGKV1OR2-108A0A075B7D4 117 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.85□□□□□ -0.51
TRIM28-209ENST00000597423 CLPSL1A2RUU4 121 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 OR2T8A6NH00 312 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 TEX46H3BTG2 121 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 IGHV3-23P01764 117 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 M6PRP20645 277 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 RAB2AP61019 212 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 PRR20EP86478 221 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 PRR20CP86479 221 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 PRR20DP86480 221 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 PRR20BP86481 221 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 PRR20AP86496 221 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 TIGITQ495A1 244 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 MIC13Q5XKP0 118 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 CLEC19AQ6UXS0 136 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 LINC01006Q8NI28 216 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 WFDC12Q8WWY7 111 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 UBE2E2Q96LR5 201 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 PFDN5Q99471 154 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 RNF2Q99496 336 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 S4R3C0 116 aa11.85□□□□□ -0.51
TRIM28-209ENST00000597423 MTORP42345 2549 aa11.84□□□□□ -0.51
TRIM28-209ENST00000597423 ELOA3CA0A087WX78 387 aaPredicted RBP11.84□□□□□ -0.51
TRIM28-209ENST00000597423 A0A1W2PPV4 95 aa11.84□□□□□ -0.51
TRIM28-209ENST00000597423 ZNF705EA8MWA4 302 aaPredicted RBP11.84□□□□□ -0.51
TRIM28-209ENST00000597423 TOMM40O96008 361 aa11.84□□□□□ -0.51
TRIM28-209ENST00000597423 CTSGP08311 255 aa11.84□□□□□ -0.51
TRIM28-209ENST00000597423 GPR183P32249 361 aa11.84□□□□□ -0.51
TRIM28-209ENST00000597423 ELLP55199 621 aaPredicted RBP11.84□□□□□ -0.51
TRIM28-209ENST00000597423 ZNF90Q03938 601 aa11.84□□□□□ -0.51
TRIM28-209ENST00000597423 ZNF343Q6P1L6 599 aa11.84□□□□□ -0.51
TRIM28-209ENST00000597423 ZNF491Q8N8L2 437 aa11.84□□□□□ -0.51
TRIM28-209ENST00000597423 OR10G4Q8NGN3 311 aa11.84□□□□□ -0.51
TRIM28-209ENST00000597423 OR10G9Q8NGN4 311 aa11.84□□□□□ -0.51
TRIM28-209ENST00000597423 OR10G7Q8NGN6 311 aa11.84□□□□□ -0.51
TRIM28-209ENST00000597423 ACTR3CQ9C0K3 210 aaPredicted RBP11.84□□□□□ -0.51
TRIM28-209ENST00000597423 DNAJC4Q9NNZ3 241 aa11.84□□□□□ -0.51
TRIM28-209ENST00000597423 RNF114Q9Y508 228 aa11.84□□□□□ -0.51
TRIM28-209ENST00000597423 F8P00451 2351 aa11.84□□□□□ -0.51
TRIM28-209ENST00000597423 ANK3Q12955 4377 aaKnown RBP11.83□□□□□ -0.52
TRIM28-209ENST00000597423 TGOLN2O43493 480 aa11.83□□□□□ -0.52
TRIM28-209ENST00000597423 HYPMO75409 117 aa11.83□□□□□ -0.52
TRIM28-209ENST00000597423 IGKV1-17P01599 117 aa11.83□□□□□ -0.52
TRIM28-209ENST00000597423 LINC00869P0C866 280 aa11.83□□□□□ -0.52
TRIM28-209ENST00000597423 FAM74A1Q5RGS3 127 aa11.83□□□□□ -0.52
TRIM28-209ENST00000597423 ZNF600Q6ZNG1 722 aa11.83□□□□□ -0.52
TRIM28-209ENST00000597423 OR51G1Q8NGK1 321 aa11.83□□□□□ -0.52
TRIM28-209ENST00000597423 FAM213BQ8TBF2 198 aa11.83□□□□□ -0.52
TRIM28-209ENST00000597423 GATAD1Q8WUU5 269 aa11.83□□□□□ -0.52
TRIM28-209ENST00000597423 GNB4Q9HAV0 340 aa11.83□□□□□ -0.52
TRIM28-209ENST00000597423 PEF1Q9UBV8 284 aaKnown RBP11.83□□□□□ -0.52
TRIM28-209ENST00000597423 PFDN2Q9UHV9 154 aa11.83□□□□□ -0.52
TRIM28-209ENST00000597423 RNF24Q9Y225 148 aa11.83□□□□□ -0.52
TRIM28-209ENST00000597423 F8W735 103 aaPredicted RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms