RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 PIGPP57054 158 aa7.1□□□□□ -1.27
LIG1-209ENST00000596104 YPEL3P61236 119 aaPredicted RBP7.1□□□□□ -1.27
LIG1-209ENST00000596104 DHODHQ02127 395 aa7.1□□□□□ -1.27
LIG1-209ENST00000596104 USF2Q15853 346 aaPredicted RBP7.1□□□□□ -1.27
LIG1-209ENST00000596104 AARDQ4LEZ3 155 aa7.1□□□□□ -1.27
LIG1-209ENST00000596104 PRSS54Q6PEW0 395 aa7.1□□□□□ -1.27
LIG1-209ENST00000596104 LHFPL1Q86WI0 220 aa7.1□□□□□ -1.27
LIG1-209ENST00000596104 ZNF486Q96H40 463 aaPredicted RBP7.1□□□□□ -1.27
LIG1-209ENST00000596104 PDCD10Q9BUL8 212 aa7.1□□□□□ -1.27
LIG1-209ENST00000596104 NRN1Q9NPD7 142 aa7.1□□□□□ -1.27
LIG1-209ENST00000596104 HLA-DRB4X5D2U9 266 aa7.1□□□□□ -1.27
LIG1-209ENST00000596104 RPS10-NUDT3A0A1W2PQS6 291 aa7.09□□□□□ -1.27
LIG1-209ENST00000596104 TMEM189A5PLL7 270 aa7.09□□□□□ -1.27
LIG1-209ENST00000596104 BUB3O43684 328 aa7.09□□□□□ -1.27
LIG1-209ENST00000596104 IFNA21P01568 189 aa7.09□□□□□ -1.27
LIG1-209ENST00000596104 PGAM2P15259 253 aa7.09□□□□□ -1.27
LIG1-209ENST00000596104 RND2P52198 227 aa7.09□□□□□ -1.27
LIG1-209ENST00000596104 SNRPD3P62318 126 aaKnown RBP7.09□□□□□ -1.27
LIG1-209ENST00000596104 SNX29P2Q8IUI4 249 aa7.09□□□□□ -1.27
LIG1-209ENST00000596104 UBE2DNLQ8IWF7 75 aa7.09□□□□□ -1.27
LIG1-209ENST00000596104 OR1S2Q8NGQ3 325 aa7.09□□□□□ -1.27
LIG1-209ENST00000596104 Q8WTZ3 238 aa7.09□□□□□ -1.27
LIG1-209ENST00000596104 ENY2Q9NPA8 101 aa7.09□□□□□ -1.27
LIG1-209ENST00000596104 DKK2Q9UBU2 259 aa7.09□□□□□ -1.27
LIG1-209ENST00000596104 HSPG2P98160 4391 aa7.09□□□□□ -1.27
LIG1-209ENST00000596104 C3orf85A0A1B0GTC6 90 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 SMIM9A6NGZ8 99 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 ATG12O94817 140 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 NXPH3O95157 252 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 APOA1P02647 267 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 IL4P05112 153 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 SLC25A4P12235 298 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 UCP1P25874 307 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 OR10J1P30954 320 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 HTR2BP41595 481 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 NKX2-1P43699 371 aaPredicted RBP7.08□□□□□ -1.28
LIG1-209ENST00000596104 EMP1P54849 157 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 DEFB1P60022 68 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 SPCS3P61009 180 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 TRIM16LQ309B1 348 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 SP6Q3SY56 376 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 RNF212Q495C1 297 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 C2orf83Q53S99 150 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 SOHLH1Q5JUK2 328 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 GDF5OSQ5U4N7 250 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 TMEM170AQ8WVE7 144 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 Q9H521 79 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 PLA2G2EQ9NZK7 142 aa7.08□□□□□ -1.28
LIG1-209ENST00000596104 TOMM40O96008 361 aa7.07□□□□□ -1.28
LIG1-209ENST00000596104 LSM3P62310 102 aaKnown RBP7.07□□□□□ -1.28
LIG1-209ENST00000596104 C1orf134Q5TEV5 83 aa7.07□□□□□ -1.28
LIG1-209ENST00000596104 FAM222AQ5U5X8 452 aa7.07□□□□□ -1.28
LIG1-209ENST00000596104 SIGLEC15Q6ZMC9 328 aa7.07□□□□□ -1.28
LIG1-209ENST00000596104 ARRDC1Q8N5I2 433 aa7.07□□□□□ -1.28
LIG1-209ENST00000596104 ZNF709Q8N972 641 aa7.07□□□□□ -1.28
LIG1-209ENST00000596104 OR52E5Q8NH55 327 aa7.07□□□□□ -1.28
LIG1-209ENST00000596104 RNASEH2CQ8TDP1 164 aaKnown RBP7.07□□□□□ -1.28
LIG1-209ENST00000596104 YIPF6Q96EC8 236 aa7.07□□□□□ -1.28
LIG1-209ENST00000596104 RRNAD1Q96FB5 475 aaKnown RBP7.07□□□□□ -1.28
LIG1-209ENST00000596104 CLUHP3Q96NS8 147 aa7.07□□□□□ -1.28
LIG1-209ENST00000596104 NIPSNAP3BQ9BS92 247 aa7.07□□□□□ -1.28
LIG1-209ENST00000596104 COMMD3Q9UBI1 195 aa7.07□□□□□ -1.28
LIG1-209ENST00000596104 KLK11Q9UBX7 282 aa7.07□□□□□ -1.28
LIG1-209ENST00000596104 RFNGQ9Y644 331 aa7.07□□□□□ -1.28
LIG1-209ENST00000596104 IGHV3OR16-12A0A075B7B8 117 aa7.06□□□□□ -1.28
LIG1-209ENST00000596104 TEX48A0A1B0GUV7 120 aa7.06□□□□□ -1.28
LIG1-209ENST00000596104 SMIM31A0A1B0GVY4 71 aa7.06□□□□□ -1.28
LIG1-209ENST00000596104 GSTZ1O43708 216 aaPredicted RBP7.06□□□□□ -1.28
LIG1-209ENST00000596104 IGKV3-20P01619 116 aa7.06□□□□□ -1.28
LIG1-209ENST00000596104 CD3DP04234 171 aa7.06□□□□□ -1.28
LIG1-209ENST00000596104 ELK1P19419 428 aa7.06□□□□□ -1.28
LIG1-209ENST00000596104 FXYD7P58549 80 aa7.06□□□□□ -1.28
LIG1-209ENST00000596104 OXA1LQ15070 435 aa7.06□□□□□ -1.28
LIG1-209ENST00000596104 RNASE10Q5GAN6 216 aaKnown RBP7.06□□□□□ -1.28
LIG1-209ENST00000596104 FAM219AQ8IW50 185 aa7.06□□□□□ -1.28
LIG1-209ENST00000596104 SLC24A4Q8NFF2 622 aa7.06□□□□□ -1.28
LIG1-209ENST00000596104 LHFPL5Q8TAF8 219 aa7.06□□□□□ -1.28
LIG1-209ENST00000596104 NPIPB3Q92617 1050 aa7.06□□□□□ -1.28
LIG1-209ENST00000596104 SAV1Q9H4B6 383 aaPredicted RBP7.06□□□□□ -1.28
LIG1-209ENST00000596104 COPZ2Q9P299 210 aa7.06□□□□□ -1.28
LIG1-209ENST00000596104 SOCS3O14543 225 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 B3GALNT1O75752 331 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 CDK2AP2O75956 126 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 CDS2O95674 445 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 RD3LP0DJH9 198 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 PSG1P11464 419 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 HTN3P15516 51 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 TNP2Q05952 138 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 ZNF79Q15937 498 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 TMEM88Q6PEY1 159 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 FOXI2Q6ZQN5 318 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 C1orf158Q8N1D5 194 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 CCDC71LQ8N9Z2 235 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 OR4D10Q8NGI6 311 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 OR51G1Q8NGK1 321 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 OR13C8Q8NGS7 320 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 RNASE11Q8TAA1 199 aaKnown RBP7.05□□□□□ -1.28
LIG1-209ENST00000596104 GLYATL2Q8WU03 294 aa7.05□□□□□ -1.28
LIG1-209ENST00000596104 WDR12Q9GZL7 423 aaKnown RBP7.05□□□□□ -1.28
LIG1-209ENST00000596104 TMEM222Q9H0R3 208 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms