RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PCBD2Q9H0N5 130 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 GTSF1LQ9H1H1 148 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 INIPQ9NRY2 104 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 ARMC1Q9NVT9 282 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 TMEM38BQ9NVV0 291 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 TAS2R1Q9NYW7 299 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 OPTCQ9UBM4 332 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 CARHSP1Q9Y2V2 147 aaKnown RBP3.82□□□□□ -1.8
VPS53-219ENST00000576019 TRAV8-1A0A0A6YYK1 113 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 A0A0J9YY10 115 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 A0A1W2PQ67 120 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 C15orf65H3BRN8 121 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 BHLHE40O14503 412 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 OR7C1O76099 320 aaPredicted RBP3.81□□□□□ -1.8
VPS53-219ENST00000576019 FAM228BP0C875 321 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 INPP1P49441 399 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 TAS2R41P59536 307 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 ARHGAP11BQ3KRB8 267 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 C1orf158Q8N1D5 194 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 OR51H1Q8NH63 302 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 GALMQ96C23 342 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 CPNE2Q96FN4 548 aaPredicted RBP3.81□□□□□ -1.8
VPS53-219ENST00000576019 SLC35G5Q96KT7 338 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 CHCHD7Q9BUK0 85 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 CMTM6Q9NX76 183 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 C21orf62Q9NYP8 219 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 IDI2-AS1Q9NZ38 188 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 ZNRD1Q9P1U0 126 aa3.81□□□□□ -1.8
VPS53-219ENST00000576019 TMED7-TICAM2A0A0A6YYA0 188 aa3.8□□□□□ -1.8
VPS53-219ENST00000576019 DPRXA6NFQ7 191 aa3.8□□□□□ -1.8
VPS53-219ENST00000576019 A8MWL6 223 aa3.8□□□□□ -1.8
VPS53-219ENST00000576019 ZNF861PO60384 105 aa3.8□□□□□ -1.8
VPS53-219ENST00000576019 DEDDO75618 318 aa3.8□□□□□ -1.8
VPS53-219ENST00000576019 HLA-DQA1P01909 254 aa3.8□□□□□ -1.8
VPS53-219ENST00000576019 CCL1P22362 96 aa3.8□□□□□ -1.8
VPS53-219ENST00000576019 RPL5P46777 297 aaKnown RBP3.8□□□□□ -1.8
VPS53-219ENST00000576019 BRMS1LQ5PSV4 323 aa3.8□□□□□ -1.8
VPS53-219ENST00000576019 GFI1BQ5VTD9 330 aa3.8□□□□□ -1.8
VPS53-219ENST00000576019 MORN3Q6PF18 240 aaPredicted RBP3.8□□□□□ -1.8
VPS53-219ENST00000576019 OR10G2Q8NGC3 310 aa3.8□□□□□ -1.8
VPS53-219ENST00000576019 SFRP2Q96HF1 295 aa3.8□□□□□ -1.8
VPS53-219ENST00000576019 NARS2Q96I59 477 aaKnown RBP3.8□□□□□ -1.8
VPS53-219ENST00000576019 GPR82Q96P67 336 aa3.8□□□□□ -1.8
VPS53-219ENST00000576019 TSSK6Q9BXA6 273 aa3.8□□□□□ -1.8
VPS53-219ENST00000576019 CISHQ9NSE2 258 aa3.8□□□□□ -1.8
VPS53-219ENST00000576019 TRBV6-6A0A0A6YYG2 114 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 PQLC2LA1A4F0 135 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 FAM159BA6NKW6 160 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 E7EQL1 145 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 INMT-MINDY4F8WBC2 141 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 STK16O75716 305 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 TTRP02766 147 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 HMGN1P05114 100 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 FGF6P10767 208 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 LINC00313P59037 77 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 DEFA1P59665 94 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 HIST1H3AP68431 136 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 H3F3AP84243 136 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 SPCS2Q15005 226 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 ZFP1Q6P2D0 407 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 SCIMPQ6UWF3 145 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 SBSNQ6UWP8 590 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 WDR86Q86TI4 376 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 DEFB106AQ8N104 65 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 DEFB125Q8N687 156 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 CNEP1R1Q8N9A8 125 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 MAL2Q969L2 176 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 OR2V2Q96R30 315 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 OR52E6Q96RD3 313 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 TBL1YQ9BQ87 522 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 RNASE7Q9H1E1 156 aaKnown RBP3.79□□□□□ -1.8
VPS53-219ENST00000576019 MED28Q9H204 178 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 PDFQ9HBH1 243 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 MRPL27Q9P0M9 148 aaKnown RBP3.79□□□□□ -1.8
VPS53-219ENST00000576019 ZNF230Q9UIE0 474 aaPredicted RBP3.79□□□□□ -1.8
VPS53-219ENST00000576019 UTP11Q9Y3A2 253 aaKnown RBP3.79□□□□□ -1.8
VPS53-219ENST00000576019 WASHC3Q9Y3C0 194 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 PXMP4Q9Y6I8 212 aa3.79□□□□□ -1.8
VPS53-219ENST00000576019 FAM236DA0A1B0GTK5 79 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 A0A1B0GV72 72 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 ZNF850A8MQ14 1090 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 POP7O75817 140 aaKnown RBP3.78□□□□□ -1.8
VPS53-219ENST00000576019 CDRT1O95170 752 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 FAM236CP0DP71 79 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 CBR1P16152 277 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 AP1S1P61966 158 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 KLHL12Q53G59 568 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 ZNF678Q5SXM1 525 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 LPCAT3Q6P1A2 487 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 CYHR1Q6ZMK1 362 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 LY6G5BQ8NDX9 201 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 OR2T27Q8NH04 317 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 OR8S1Q8NH09 359 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 OR4A5Q8NH83 315 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 CLDND2Q8NHS1 167 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 MCFD2Q8NI22 146 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 ABHD14BQ96IU4 210 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 ZNF430Q9H8G1 570 aaPredicted RBP3.78□□□□□ -1.8
VPS53-219ENST00000576019 BATF3Q9NR55 127 aa3.78□□□□□ -1.8
VPS53-219ENST00000576019 C19orf12Q9NSK7 152 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms