RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 ATG12O94817 140 aa6.84□□□□□ -1.31
CIITA-208ENST00000572665 PMP2P02689 132 aa6.84□□□□□ -1.31
CIITA-208ENST00000572665 FCER2P06734 321 aa6.84□□□□□ -1.31
CIITA-208ENST00000572665 RPA2P15927 270 aa6.84□□□□□ -1.31
CIITA-208ENST00000572665 FCGR2BP31994 310 aaPredicted RBP6.84□□□□□ -1.31
CIITA-208ENST00000572665 MFAP4P55083 255 aa6.84□□□□□ -1.31
CIITA-208ENST00000572665 ERHP84090 104 aaKnown RBP6.84□□□□□ -1.31
CIITA-208ENST00000572665 DEFB135Q30KP9 77 aa6.84□□□□□ -1.31
CIITA-208ENST00000572665 CEMP1Q6PRD7 247 aaPredicted RBP6.84□□□□□ -1.31
CIITA-208ENST00000572665 H2BFWTQ7Z2G1 175 aa6.84□□□□□ -1.31
CIITA-208ENST00000572665 SAMD12Q8N8I0 201 aa6.84□□□□□ -1.31
CIITA-208ENST00000572665 OR4A16Q8NH70 328 aa6.84□□□□□ -1.31
CIITA-208ENST00000572665 GATAD1Q8WUU5 269 aa6.84□□□□□ -1.31
CIITA-208ENST00000572665 FCAMRQ8WWV6 532 aa6.84□□□□□ -1.31
CIITA-208ENST00000572665 UBQLN2Q9UHD9 624 aa6.84□□□□□ -1.31
CIITA-208ENST00000572665 SELENOKQ9Y6D0 94 aa6.84□□□□□ -1.31
CIITA-208ENST00000572665 TRAV14DV4A0A0A6YYC5 116 aa6.83□□□□□ -1.32
CIITA-208ENST00000572665 C15orf61A6NNL5 157 aa6.83□□□□□ -1.32
CIITA-208ENST00000572665 GNG7O60262 68 aa6.83□□□□□ -1.32
CIITA-208ENST00000572665 YIF1AO95070 293 aa6.83□□□□□ -1.32
CIITA-208ENST00000572665 CTSDP07339 412 aaPredicted RBP6.83□□□□□ -1.32
CIITA-208ENST00000572665 G6PCP35575 357 aa6.83□□□□□ -1.32
CIITA-208ENST00000572665 TAS2R20P59543 309 aa6.83□□□□□ -1.32
CIITA-208ENST00000572665 CLVS1Q8IUQ0 354 aaPredicted RBP6.83□□□□□ -1.32
CIITA-208ENST00000572665 PDCD10Q9BUL8 212 aa6.83□□□□□ -1.32
CIITA-208ENST00000572665 MFFQ9GZY8 342 aa6.83□□□□□ -1.32
CIITA-208ENST00000572665 TMEM231Q9H6L2 316 aa6.83□□□□□ -1.32
CIITA-208ENST00000572665 TMEM14BQ9NUH8 114 aa6.83□□□□□ -1.32
CIITA-208ENST00000572665 SMPXQ9UHP9 88 aa6.83□□□□□ -1.32
CIITA-208ENST00000572665 ANAPC10Q9UM13 185 aa6.83□□□□□ -1.32
CIITA-208ENST00000572665 DYNC2H1Q8NCM8 4307 aaKnown RBP6.82□□□□□ -1.32
CIITA-208ENST00000572665 IGHV7-4-1A0A0J9YVY3 117 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 MPTX1A8MV57 137 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 H3BMQ9 156 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 K7EIM0 57 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 CORTO00230 105 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 IFNA4P05014 189 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 IGKV2-30P06310 120 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 RPL35AP18077 110 aaKnown RBP6.82□□□□□ -1.32
CIITA-208ENST00000572665 HRH1P35367 487 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 SNCAP37840 140 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 NPBWR1P48145 328 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 RORCP51449 518 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 SUB1P53999 127 aaKnown RBP eCLIP6.82□□□□□ -1.32
CIITA-208ENST00000572665 SPCS2Q15005 226 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 CENPSQ8N2Z9 138 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 ZNF114Q8NC26 417 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 DUSP18Q8NEJ0 188 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 SAT2Q96F10 170 aaPredicted RBP6.82□□□□□ -1.32
CIITA-208ENST00000572665 OR10C1Q96KK4 312 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 CHRDL1Q9BU40 450 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 RHPN1-AS1Q9BWJ2 59 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 CSTL1Q9H114 145 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 NSG2Q9Y328 171 aa6.82□□□□□ -1.32
CIITA-208ENST00000572665 STARD9Q9P2P6 4700 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 IGHV3-21A0A0B4J1V1 117 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 hDV102S1A0JD36 115 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 ZNF701M0R085 212 aaPredicted RBP6.81□□□□□ -1.32
CIITA-208ENST00000572665 DNASE2O00115 360 aaPredicted RBP6.81□□□□□ -1.32
CIITA-208ENST00000572665 CHEK1O14757 476 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 DFFBO76075 338 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 CTSGP08311 255 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 ANXA7P20073 488 aaKnown RBP6.81□□□□□ -1.32
CIITA-208ENST00000572665 HLA-DMAP28067 261 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 RCVRNP35243 200 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 TCTAP57738 103 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 HSPE1P61604 102 aaKnown RBP6.81□□□□□ -1.32
CIITA-208ENST00000572665 PRCDQ00LT1 54 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 PHLDA2Q53GA4 152 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 TMEM41BQ5BJD5 291 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 PAPPA-AS1Q5QFB9 102 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 DYNC2LI1Q8TCX1 351 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 ZNF486Q96H40 463 aaPredicted RBP6.81□□□□□ -1.32
CIITA-208ENST00000572665 GRAMD2BQ96HH9 432 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 NARS2Q96I59 477 aaKnown RBP6.81□□□□□ -1.32
CIITA-208ENST00000572665 RARRES2Q99969 163 aa6.81□□□□□ -1.32
CIITA-208ENST00000572665 NXF2Q9GZY0 626 aaKnown RBP6.81□□□□□ -1.32
CIITA-208ENST00000572665 TRAV2A0A0B4J234 112 aa6.8□□□□□ -1.32
CIITA-208ENST00000572665 A0A1W2PS18 150 aa6.8□□□□□ -1.32
CIITA-208ENST00000572665 CTDSP2O14595 271 aa6.8□□□□□ -1.32
CIITA-208ENST00000572665 ZNF207O43670 478 aaKnown RBP6.8□□□□□ -1.32
CIITA-208ENST00000572665 MT-CO2P00403 227 aa6.8□□□□□ -1.32
CIITA-208ENST00000572665 APOA1P02647 267 aa6.8□□□□□ -1.32
CIITA-208ENST00000572665 EIF2B2P49770 351 aaKnown RBP6.8□□□□□ -1.32
CIITA-208ENST00000572665 MFAP2P55001 183 aa6.8□□□□□ -1.32
CIITA-208ENST00000572665 ZNF600Q6ZNG1 722 aa6.8□□□□□ -1.32
CIITA-208ENST00000572665 C9orf47Q6ZRZ4 202 aa6.8□□□□□ -1.32
CIITA-208ENST00000572665 C15orf40Q8WUR7 153 aa6.8□□□□□ -1.32
CIITA-208ENST00000572665 PHLDA1Q8WV24 401 aaPredicted RBP6.8□□□□□ -1.32
CIITA-208ENST00000572665 AP3S1Q92572 193 aa6.8□□□□□ -1.32
CIITA-208ENST00000572665 PINX1Q96BK5 328 aaKnown RBP6.8□□□□□ -1.32
CIITA-208ENST00000572665 RNF2Q99496 336 aa6.8□□□□□ -1.32
CIITA-208ENST00000572665 FXYD6Q9H0Q3 95 aa6.8□□□□□ -1.32
CIITA-208ENST00000572665 ENY2Q9NPA8 101 aa6.8□□□□□ -1.32
CIITA-208ENST00000572665 CCDC59Q9P031 241 aaKnown RBP6.8□□□□□ -1.32
CIITA-208ENST00000572665 RYR2Q92736 4967 aa6.8□□□□□ -1.32
CIITA-208ENST00000572665 IGHV3OR16-8A0A075B7F1 116 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 I3L2K1 104 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 ST8SIA3O43173 380 aa6.79□□□□□ -1.32
CIITA-208ENST00000572665 NOL3O60936 208 aaKnown RBP6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms