RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 RPP25LQ8N5L8 163 aaKnown RBP13.19□□□□□ -0.3
CHD3-214ENST00000572579 RNASE11Q8TAA1 199 aaKnown RBP13.19□□□□□ -0.3
CHD3-214ENST00000572579 METTL26Q96S19 204 aa13.19□□□□□ -0.3
CHD3-214ENST00000572579 RABAC1Q9UI14 185 aa13.19□□□□□ -0.3
CHD3-214ENST00000572579 GSTZ1O43708 216 aaPredicted RBP13.18□□□□□ -0.3
CHD3-214ENST00000572579 RND2P52198 227 aa13.18□□□□□ -0.3
CHD3-214ENST00000572579 SUPT4H1P63272 117 aaKnown RBP13.18□□□□□ -0.3
CHD3-214ENST00000572579 IL18Q14116 193 aa13.18□□□□□ -0.3
CHD3-214ENST00000572579 TRPT1Q86TN4 253 aaKnown RBP13.18□□□□□ -0.3
CHD3-214ENST00000572579 HEYLQ9NQ87 328 aaPredicted RBP13.18□□□□□ -0.3
CHD3-214ENST00000572579 CCDC59Q9P031 241 aaKnown RBP13.18□□□□□ -0.3
CHD3-214ENST00000572579 ZNF688P0C7X2 276 aa13.17□□□□□ -0.3
CHD3-214ENST00000572579 C4BPBP20851 252 aa13.17□□□□□ -0.3
CHD3-214ENST00000572579 USF2Q15853 346 aaPredicted RBP13.17□□□□□ -0.3
CHD3-214ENST00000572579 TMEM217Q8N7C4 229 aa13.17□□□□□ -0.3
CHD3-214ENST00000572579 Q8NAQ8 132 aa13.17□□□□□ -0.3
CHD3-214ENST00000572579 SLC24A4Q8NFF2 622 aa13.17□□□□□ -0.3
CHD3-214ENST00000572579 STXBP6Q8NFX7 210 aa13.17□□□□□ -0.3
CHD3-214ENST00000572579 GLMPQ8WWB7 406 aa13.17□□□□□ -0.3
CHD3-214ENST00000572579 NPIPB3Q92617 1050 aa13.17□□□□□ -0.3
CHD3-214ENST00000572579 C11orf68Q9H3H3 251 aaKnown RBP13.17□□□□□ -0.3
CHD3-214ENST00000572579 AGRNO00468 2067 aa13.17□□□□□ -0.3
CHD3-214ENST00000572579 RBMY1A1P0DJD3 496 aaKnown RBP13.16□□□□□ -0.3
CHD3-214ENST00000572579 RBMY1CP0DJD4 496 aa13.16□□□□□ -0.3
CHD3-214ENST00000572579 OR10J1P30954 320 aa13.16□□□□□ -0.3
CHD3-214ENST00000572579 TNFSF8P32971 234 aa13.16□□□□□ -0.3
CHD3-214ENST00000572579 TMBIM6P55061 237 aa13.16□□□□□ -0.3
CHD3-214ENST00000572579 YPEL3P61236 119 aaPredicted RBP13.16□□□□□ -0.3
CHD3-214ENST00000572579 RBMY1FQ15415 496 aaKnown RBP13.16□□□□□ -0.3
CHD3-214ENST00000572579 C16orf54Q6UWD8 224 aa13.16□□□□□ -0.3
CHD3-214ENST00000572579 LYZL2Q7Z4W2 148 aa13.16□□□□□ -0.3
CHD3-214ENST00000572579 RNASEH2CQ8TDP1 164 aaKnown RBP13.16□□□□□ -0.3
CHD3-214ENST00000572579 RAB2BQ8WUD1 216 aa13.16□□□□□ -0.3
CHD3-214ENST00000572579 PRRT1Q99946 306 aa13.16□□□□□ -0.3
CHD3-214ENST00000572579 TRAV30A0A087WSZ9 112 aa13.15□□□□□ -0.3
CHD3-214ENST00000572579 A0A1W2PS18 150 aa13.15□□□□□ -0.3
CHD3-214ENST00000572579 CEBPZOSA8MTT3 80 aa13.15□□□□□ -0.3
CHD3-214ENST00000572579 DEDDO75618 318 aa13.15□□□□□ -0.3
CHD3-214ENST00000572579 OR1S2Q8NGQ3 325 aa13.15□□□□□ -0.3
CHD3-214ENST00000572579 C11orf45Q8TAV5 145 aa13.15□□□□□ -0.3
CHD3-214ENST00000572579 GRAMD2BQ96HH9 432 aa13.15□□□□□ -0.3
CHD3-214ENST00000572579 TMEM231Q9H6L2 316 aa13.15□□□□□ -0.3
CHD3-214ENST00000572579 KLK5Q9Y337 293 aaPredicted RBP13.15□□□□□ -0.3
CHD3-214ENST00000572579 RPS10-NUDT3A0A1W2PQS6 291 aa13.14□□□□□ -0.31
CHD3-214ENST00000572579 H3BMQ9 156 aa13.14□□□□□ -0.31
CHD3-214ENST00000572579 SLC25A4P12235 298 aa13.14□□□□□ -0.31
CHD3-214ENST00000572579 PRR20EP86478 221 aa13.14□□□□□ -0.31
CHD3-214ENST00000572579 PRR20CP86479 221 aa13.14□□□□□ -0.31
CHD3-214ENST00000572579 PRR20DP86480 221 aa13.14□□□□□ -0.31
CHD3-214ENST00000572579 PRR20BP86481 221 aa13.14□□□□□ -0.31
CHD3-214ENST00000572579 PRR20AP86496 221 aa13.14□□□□□ -0.31
CHD3-214ENST00000572579 STHQ8IWL8 128 aa13.14□□□□□ -0.31
CHD3-214ENST00000572579 CSNK1G2-AS1Q8NCQ2 148 aa13.14□□□□□ -0.31
CHD3-214ENST00000572579 Q8WTZ3 238 aa13.14□□□□□ -0.31
CHD3-214ENST00000572579 IL22RA2Q969J5 263 aa13.14□□□□□ -0.31
CHD3-214ENST00000572579 HSPB7Q9UBY9 170 aa13.14□□□□□ -0.31
CHD3-214ENST00000572579 FBXL17Q9UF56 701 aa13.14□□□□□ -0.31
CHD3-214ENST00000572579 HNRNPCP07910 306 aaKnown RBP eCLIP13.13□□□□□ -0.31
CHD3-214ENST00000572579 SULT1A3P0DMM9 295 aa13.13□□□□□ -0.31
CHD3-214ENST00000572579 SULT1A4P0DMN0 295 aa13.13□□□□□ -0.31
CHD3-214ENST00000572579 NPY1RP25929 384 aa13.13□□□□□ -0.31
CHD3-214ENST00000572579 GSG1LQ6UXU4 331 aa13.13□□□□□ -0.31
CHD3-214ENST00000572579 RAB40CQ96S21 281 aa13.13□□□□□ -0.31
CHD3-214ENST00000572579 RBKSQ9H477 322 aa13.13□□□□□ -0.31
CHD3-214ENST00000572579 CLEC5AQ9NY25 188 aa13.13□□□□□ -0.31
CHD3-214ENST00000572579 X6R8D5 127 aa13.13□□□□□ -0.31
CHD3-214ENST00000572579 IGKV1D-37A0A075B6S9 117 aa13.12□□□□□ -0.31
CHD3-214ENST00000572579 A0A0B4J2A0 478 aa13.12□□□□□ -0.31
CHD3-214ENST00000572579 BUB3O43684 328 aa13.12□□□□□ -0.31
CHD3-214ENST00000572579 AKR1C4P17516 323 aa13.12□□□□□ -0.31
CHD3-214ENST00000572579 KLF9Q13886 244 aaPredicted RBP13.12□□□□□ -0.31
CHD3-214ENST00000572579 ACTL10Q5JWF8 245 aa13.12□□□□□ -0.31
CHD3-214ENST00000572579 LGALS9CQ6DKI2 356 aa13.12□□□□□ -0.31
CHD3-214ENST00000572579 ACY3Q96HD9 319 aa13.12□□□□□ -0.31
CHD3-214ENST00000572579 BCL7BQ9BQE9 202 aa13.12□□□□□ -0.31
CHD3-214ENST00000572579 MCUBQ9NWR8 336 aa13.12□□□□□ -0.31
CHD3-214ENST00000572579 SHPKQ9UHJ6 478 aa13.12□□□□□ -0.31
CHD3-214ENST00000572579 ELOA3CA0A087WX78 387 aaPredicted RBP13.11□□□□□ -0.31
CHD3-214ENST00000572579 IGHV4-28A0A0C4DH34 117 aa13.11□□□□□ -0.31
CHD3-214ENST00000572579 FABP12A6NFH5 140 aa13.11□□□□□ -0.31
CHD3-214ENST00000572579 ZNF705EA8MWA4 302 aaPredicted RBP13.11□□□□□ -0.31
CHD3-214ENST00000572579 TOMM40O96008 361 aa13.11□□□□□ -0.31
CHD3-214ENST00000572579 IL4P05112 153 aa13.11□□□□□ -0.31
CHD3-214ENST00000572579 RD3LP0DJH9 198 aa13.11□□□□□ -0.31
CHD3-214ENST00000572579 PSG1P11464 419 aa13.11□□□□□ -0.31
CHD3-214ENST00000572579 DHRS2Q13268 280 aa13.11□□□□□ -0.31
CHD3-214ENST00000572579 TRIM63Q969Q1 353 aa13.11□□□□□ -0.31
CHD3-214ENST00000572579 RABL2AQ9UBK7 228 aaPredicted RBP13.11□□□□□ -0.31
CHD3-214ENST00000572579 RSL24D1Q9UHA3 163 aaKnown RBP13.11□□□□□ -0.31
CHD3-214ENST00000572579 RABL2BQ9UNT1 228 aa13.11□□□□□ -0.31
CHD3-214ENST00000572579 KCNIP3Q9Y2W7 256 aa13.11□□□□□ -0.31
CHD3-214ENST00000572579 PITX3O75364 302 aa13.1□□□□□ -0.31
CHD3-214ENST00000572579 CCR6P51684 374 aa13.1□□□□□ -0.31
CHD3-214ENST00000572579 DEFB1P60022 68 aa13.1□□□□□ -0.31
CHD3-214ENST00000572579 SMCO1Q147U7 214 aa13.1□□□□□ -0.31
CHD3-214ENST00000572579 PSMG4Q5JS54 123 aa13.1□□□□□ -0.31
CHD3-214ENST00000572579 OR51G1Q8NGK1 321 aa13.1□□□□□ -0.31
CHD3-214ENST00000572579 DTD1Q8TEA8 209 aa13.1□□□□□ -0.31
CHD3-214ENST00000572579 SCP2D1Q9UJQ7 156 aa13.1□□□□□ -0.31
CHD3-214ENST00000572579 U3KQ87 197 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms