RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 BCAP31P51572 246 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 DLK1P80370 383 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 TIGITQ495A1 244 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 FAM209BQ5JX69 171 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 OR8G2PQ6IF36 304 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 ACSM6Q6P461 480 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 TREML4Q6UXN2 200 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 REC114Q7Z4M0 266 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 NOXA1Q86UR1 476 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 GPHB5Q86YW7 130 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 OR2T35Q8NGX2 323 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 WFDC1Q9HC57 220 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 FNDC10F2Z333 226 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 L7N2F9 121 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 LGALS9O00182 355 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 CYB5BO43169 146 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 WIPF1O43516 503 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 SCAF4O95104 1147 aaKnown RBP7.06□□□□□ -1.28
VPS35-211ENST00000569950 CAV2P51636 162 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 SYNJ2BPP57105 145 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 RAB11AP62491 216 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 VAMP2P63027 116 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 ZNF90Q03938 601 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 Q56UQ5 140 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 SPSB3Q6PJ21 355 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 STPG3Q8N7X2 389 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 UBAC2Q8NBM4 344 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 TMEM190Q8WZ59 177 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 ACY3Q96HD9 319 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 TNFSF18Q9UNG2 199 aa7.06□□□□□ -1.28
VPS35-211ENST00000569950 PRKDCP78527 4128 aaKnown RBP7.05□□□□□ -1.28
VPS35-211ENST00000569950 IGHV3OR16-8A0A075B7F1 116 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 RPS10-NUDT3A0A1W2PQS6 291 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 CSN3P07498 182 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 C8orf88P0DMB2 117 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 PVALBP20472 110 aaPredicted RBP7.05□□□□□ -1.28
VPS35-211ENST00000569950 ZP3P21754 424 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 RPL12P30050 165 aaKnown RBP7.05□□□□□ -1.28
VPS35-211ENST00000569950 OR10J1P30954 320 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 NPBWR1P48145 328 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 YPEL3P61236 119 aaPredicted RBP7.05□□□□□ -1.28
VPS35-211ENST00000569950 RPP30P78346 268 aaKnown RBP7.05□□□□□ -1.28
VPS35-211ENST00000569950 SLC38A11Q08AI6 406 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 ETFRF1Q6IPR1 90 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 TOMM20LQ6UXN7 152 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 TMEM144Q7Z5S9 345 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 C1QL4Q86Z23 238 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 TCTE3Q8IZS6 198 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 TMEM217Q8N7C4 229 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 AQP10Q96PS8 301 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 TRGV9Q99603 122 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 MGST2Q99735 147 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 NEURL2Q9BR09 285 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 GGACTQ9BVM4 153 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 PAIP2BQ9ULR5 123 aaKnown RBP7.05□□□□□ -1.28
VPS35-211ENST00000569950 WDR83OSQ9Y284 106 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 HSPB11Q9Y547 144 aa7.05□□□□□ -1.28
VPS35-211ENST00000569950 WI2-2373I1.2A0A1W2PRP0 233 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 NDUFA4O00483 81 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 OVOL1O14753 267 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 GNG7O60262 68 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 TOMM40O96008 361 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 PF4P02776 101 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 PSG1P11464 419 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 GATA2P23769 480 aaPredicted RBP7.04□□□□□ -1.28
VPS35-211ENST00000569950 USF2Q15853 346 aaPredicted RBP7.04□□□□□ -1.28
VPS35-211ENST00000569950 RPEL1Q2QD12 228 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 TM4SF20Q53R12 229 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 SAMD5Q5TGI4 173 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 LILRB2Q8N423 598 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 OR10P1Q8NGE3 313 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 OR9G4Q8NGQ1 327 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 OR1S2Q8NGQ3 325 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 OR5C1Q8NGR4 320 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 DPF1Q92782 380 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 SLC35E1Q96K37 410 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 PUS1Q9Y606 427 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS35-211ENST00000569950 RFNGQ9Y644 331 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 U3KQE9 123 aa7.04□□□□□ -1.28
VPS35-211ENST00000569950 C2orf70A6NJV1 201 aa7.03□□□□□ -1.28
VPS35-211ENST00000569950 APOHP02749 345 aaPredicted RBP7.03□□□□□ -1.28
VPS35-211ENST00000569950 RLN2P04090 185 aa7.03□□□□□ -1.28
VPS35-211ENST00000569950 LINC00869P0C866 280 aa7.03□□□□□ -1.28
VPS35-211ENST00000569950 PET100P0DJ07 73 aa7.03□□□□□ -1.28
VPS35-211ENST00000569950 IGLL1P15814 213 aa7.03□□□□□ -1.28
VPS35-211ENST00000569950 CXCL2P19875 107 aa7.03□□□□□ -1.28
VPS35-211ENST00000569950 S100A11P31949 105 aa7.03□□□□□ -1.28
VPS35-211ENST00000569950 BAXQ07812 192 aa7.03□□□□□ -1.28
VPS35-211ENST00000569950 ZNF600Q6ZNG1 722 aa7.03□□□□□ -1.28
VPS35-211ENST00000569950 THAP6Q8TBB0 222 aa7.03□□□□□ -1.28
VPS35-211ENST00000569950 TMEM147Q9BVK8 224 aa7.03□□□□□ -1.28
VPS35-211ENST00000569950 NPVFQ9HCQ7 196 aa7.03□□□□□ -1.28
VPS35-211ENST00000569950 GAR1Q9NY12 217 aaKnown RBP7.03□□□□□ -1.28
VPS35-211ENST00000569950 SIGLEC8Q9NYZ4 499 aa7.03□□□□□ -1.28
VPS35-211ENST00000569950 SLC45A2Q9UMX9 530 aa7.03□□□□□ -1.28
VPS35-211ENST00000569950 TRAV30A0A087WSZ9 112 aa7.02□□□□□ -1.29
VPS35-211ENST00000569950 IZUMO1RA6ND01 250 aa7.02□□□□□ -1.29
VPS35-211ENST00000569950 G3V4G9 280 aa7.02□□□□□ -1.29
VPS35-211ENST00000569950 K7EMT4 169 aa7.02□□□□□ -1.29
VPS35-211ENST00000569950 AGPAT2O15120 278 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms