RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 TRAPPC1Q9Y5R8 145 aa7.1□□□□□ -1.27
LINC00558-201ENST00000569422 RAI1Q7Z5J4 1906 aaPredicted RBP7.1□□□□□ -1.27
LINC00558-201ENST00000569422 TCF21O43680 179 aa7.1□□□□□ -1.27
LINC00558-201ENST00000569422 LINC00869P0C866 280 aa7.1□□□□□ -1.27
LINC00558-201ENST00000569422 COX7A1P24310 79 aa7.1□□□□□ -1.27
LINC00558-201ENST00000569422 TMPRSS3P57727 454 aa7.1□□□□□ -1.27
LINC00558-201ENST00000569422 ERHP84090 104 aaKnown RBP7.1□□□□□ -1.27
LINC00558-201ENST00000569422 RBPJQ06330 500 aa7.1□□□□□ -1.27
LINC00558-201ENST00000569422 C3orf36Q3SXR2 165 aa7.1□□□□□ -1.27
LINC00558-201ENST00000569422 MORN5Q5VZ52 161 aa7.1□□□□□ -1.27
LINC00558-201ENST00000569422 ZNF562Q6V9R5 426 aa7.1□□□□□ -1.27
LINC00558-201ENST00000569422 RBPMS2Q6ZRY4 209 aaKnown RBP7.1□□□□□ -1.27
LINC00558-201ENST00000569422 PITPNC1Q9UKF7 332 aa7.1□□□□□ -1.27
LINC00558-201ENST00000569422 NAV3Q8IVL0 2385 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 TRAV26-1A0A087WT03 109 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 GRIFINA4D1Z8 144 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 PHOX2AO14813 284 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 MT-CO2P00403 227 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 RNASE2P10153 161 aaKnown RBP7.09□□□□□ -1.27
LINC00558-201ENST00000569422 MGST1P10620 155 aaKnown RBP7.09□□□□□ -1.27
LINC00558-201ENST00000569422 RPL29P47914 159 aaKnown RBP7.09□□□□□ -1.27
LINC00558-201ENST00000569422 TCL1AP56279 114 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 ERVFC1-1P60608 527 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 ZNF90Q03938 601 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 FXYD3Q14802 87 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 C5orf47Q569G3 176 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 OR1P1Q8NH06 330 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 NPIPB3Q92617 1050 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 SMIM12Q96EX1 92 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 SGK494Q96LW2 274 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 AKAP6Q13023 2319 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.09□□□□□ -1.27
LINC00558-201ENST00000569422 VENTXO95231 258 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 FRMD6-AS1P0C7T7 363 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 CNTFRP26992 372 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 PSG3Q16557 428 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 PQLC2Q6ZP29 291 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 OR10G8Q8NGN5 311 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 SERTAD4Q9NUC0 356 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 SLC45A2Q9UMX9 530 aa7.09□□□□□ -1.27
LINC00558-201ENST00000569422 ANKHD1Q8IWZ3 2542 aaKnown RBP7.09□□□□□ -1.27
LINC00558-201ENST00000569422 SPTAN1Q13813 2472 aaKnown RBP7.09□□□□□ -1.28
LINC00558-201ENST00000569422 IGHV1-69-2A0A0G2JMI3 117 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 A0A1W2PRD5 423 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 A0A1W2PRF3 423 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 A0A1W2PRM7 423 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 TSTD3H0UI37 97 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 K7EN84 100 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 OR5G3P0C626 314 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 PRR20EP86478 221 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 PRR20CP86479 221 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 PRR20DP86480 221 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 PRR20BP86481 221 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 PRR20AP86496 221 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 WT1-ASQ06250 92 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 ZNF833PQ6ZTB9 187 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 OR1L8Q8NGR8 309 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 SLC35E1Q96K37 410 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 LINC00479Q96M42 142 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 RNASE7Q9H1E1 156 aaKnown RBP7.08□□□□□ -1.28
LINC00558-201ENST00000569422 TSSC4Q9Y5U2 329 aaPredicted RBP7.08□□□□□ -1.28
LINC00558-201ENST00000569422 CHD8Q9HCK8 2581 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 SHISA9B4DS77 424 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 H3BTX0 84 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 MOSP00540 346 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 AMBPP02760 352 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 PYYP10082 97 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 CBLN1P23435 193 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 LOXP28300 417 aaPredicted RBP7.08□□□□□ -1.28
LINC00558-201ENST00000569422 PDLIM4P50479 330 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 MRPL41Q8IXM3 137 aaKnown RBP7.08□□□□□ -1.28
LINC00558-201ENST00000569422 TMEM183AQ8IXX5 376 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 OR4C13Q8NGP0 309 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 SPTBN1Q01082 2364 aaKnown RBP7.08□□□□□ -1.28
LINC00558-201ENST00000569422 SPTBN4Q9H254 2564 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 EREGO14944 169 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 HIST1H1BP16401 226 aaKnown RBP7.08□□□□□ -1.28
LINC00558-201ENST00000569422 ORM2P19652 201 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 SRP14P37108 136 aaKnown RBP7.08□□□□□ -1.28
LINC00558-201ENST00000569422 NBL1P41271 181 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 TNXAQ16473 311 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 COX19Q49B96 90 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 TEX38Q6PEX7 206 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 OR5B3Q8NH48 314 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 OSR1Q8TAX0 266 aaPredicted RBP7.08□□□□□ -1.28
LINC00558-201ENST00000569422 PYGO2Q9BRQ0 406 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 FNDC4Q9H6D8 234 aaPredicted RBP7.08□□□□□ -1.28
LINC00558-201ENST00000569422 FKBP11Q9NYL4 201 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 BET1LQ9NYM9 111 aa7.08□□□□□ -1.28
LINC00558-201ENST00000569422 NCOR2Q9Y618 2525 aa7.07□□□□□ -1.28
LINC00558-201ENST00000569422 GGCTO75223 188 aaKnown RBP7.07□□□□□ -1.28
LINC00558-201ENST00000569422 CD3EP07766 207 aa7.07□□□□□ -1.28
LINC00558-201ENST00000569422 CD33P20138 364 aa7.07□□□□□ -1.28
LINC00558-201ENST00000569422 GNG4P50150 75 aa7.07□□□□□ -1.28
LINC00558-201ENST00000569422 MEF2CQ06413 473 aaPredicted RBP7.07□□□□□ -1.28
LINC00558-201ENST00000569422 CD69Q07108 199 aa7.07□□□□□ -1.28
LINC00558-201ENST00000569422 CENPWQ5EE01 88 aa7.07□□□□□ -1.28
LINC00558-201ENST00000569422 PRR31Q5SQ13 230 aa7.07□□□□□ -1.28
LINC00558-201ENST00000569422 RUSC1-AS1Q66K80 236 aa7.07□□□□□ -1.28
LINC00558-201ENST00000569422 TMEM256Q8N2U0 113 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms