RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 GSX1Q9H4S2 264 aaPredicted RBP11.81□□□□□ -0.52
VPS35-210ENST00000568784 SLC25A10Q9UBX3 287 aaPredicted RBP11.81□□□□□ -0.52
VPS35-210ENST00000568784 PPOXP50336 477 aa11.8□□□□□ -0.52
VPS35-210ENST00000568784 SUB1P53999 127 aaKnown RBP eCLIP11.8□□□□□ -0.524e-9■■■■□ 22.6
VPS35-210ENST00000568784 LYZP61626 148 aa11.8□□□□□ -0.52
VPS35-210ENST00000568784 KIR3DL3Q8N743 410 aa11.8□□□□□ -0.52
VPS35-210ENST00000568784 NUP35Q8NFH5 326 aa11.8□□□□□ -0.52
VPS35-210ENST00000568784 C11orf52Q96A22 123 aa11.8□□□□□ -0.52
VPS35-210ENST00000568784 PCSK5Q92824 1860 aa11.8□□□□□ -0.52
VPS35-210ENST00000568784 TRIP6Q15654 476 aaKnown RBP11.8□□□□□ -0.52
VPS35-210ENST00000568784 TMEM177Q53S58 311 aa11.8□□□□□ -0.52
VPS35-210ENST00000568784 NEUROG1Q92886 237 aa11.8□□□□□ -0.52
VPS35-210ENST00000568784 ZNF503Q96F45 646 aa11.8□□□□□ -0.52
VPS35-210ENST00000568784 FAM90A9PA6NNJ1 464 aa11.8□□□□□ -0.52
VPS35-210ENST00000568784 F2RL2O00254 374 aa11.8□□□□□ -0.52
VPS35-210ENST00000568784 P01737 135 aa11.8□□□□□ -0.52
VPS35-210ENST00000568784 ZNF71Q9NQZ8 489 aaPredicted RBP11.8□□□□□ -0.52
VPS35-210ENST00000568784 COL6A6A6NMZ7 2263 aa11.8□□□□□ -0.52
VPS35-210ENST00000568784 DLL1O00548 723 aa11.79□□□□□ -0.52
VPS35-210ENST00000568784 HIST1H1EP10412 219 aaKnown RBP11.79□□□□□ -0.52
VPS35-210ENST00000568784 DIAPH2-AS1Q14236 149 aa11.79□□□□□ -0.52
VPS35-210ENST00000568784 RNASE2P10153 161 aaKnown RBP11.79□□□□□ -0.52
VPS35-210ENST00000568784 COX19Q49B96 90 aa11.79□□□□□ -0.52
VPS35-210ENST00000568784 OR10J3Q5JRS4 329 aa11.79□□□□□ -0.52
VPS35-210ENST00000568784 ZNF430Q9H8G1 570 aaPredicted RBP11.79□□□□□ -0.52
VPS35-210ENST00000568784 ZFP30Q9Y2G7 519 aa11.79□□□□□ -0.52
VPS35-210ENST00000568784 A0A1B0GWJ7 208 aa11.79□□□□□ -0.52
VPS35-210ENST00000568784 A0A1W2PRE2 83 aa11.79□□□□□ -0.52
VPS35-210ENST00000568784 TMEM249Q2WGJ8 235 aa11.79□□□□□ -0.52
VPS35-210ENST00000568784 TNFRSF19Q9NS68 423 aa11.79□□□□□ -0.52
VPS35-210ENST00000568784 ZFHX4Q86UP3 3567 aa11.79□□□□□ -0.52
VPS35-210ENST00000568784 TRAV8-1A0A0A6YYK1 113 aa11.78□□□□□ -0.52
VPS35-210ENST00000568784 COL8A1P27658 744 aa11.78□□□□□ -0.52
VPS35-210ENST00000568784 TMPRSS3P57727 454 aa11.78□□□□□ -0.52
VPS35-210ENST00000568784 OR1L4Q8NGR5 311 aa11.78□□□□□ -0.52
VPS35-210ENST00000568784 TMSB15BA0A087X1C1 80 aa11.78□□□□□ -0.52
VPS35-210ENST00000568784 RBP4P02753 201 aa11.78□□□□□ -0.52
VPS35-210ENST00000568784 NIT1Q86X76 327 aa11.78□□□□□ -0.52
VPS35-210ENST00000568784 SPACA3Q8IXA5 215 aa11.78□□□□□ -0.52
VPS35-210ENST00000568784 E7EUB6 86 aa11.78□□□□□ -0.52
VPS35-210ENST00000568784 BTF3P20290 206 aaKnown RBP11.78□□□□□ -0.52
VPS35-210ENST00000568784 ZNF738Q8NE65 137 aa11.78□□□□□ -0.52
VPS35-210ENST00000568784 DYNLRB1Q9NP97 96 aa11.78□□□□□ -0.52
VPS35-210ENST00000568784 hDV102S1A0JD36 115 aa11.77□□□□□ -0.52
VPS35-210ENST00000568784 OR4C46A6NHA9 309 aa11.77□□□□□ -0.52
VPS35-210ENST00000568784 TSPOP30536 169 aa11.77□□□□□ -0.52
VPS35-210ENST00000568784 MBNL2Q5VZF2 373 aaKnown RBP11.77□□□□□ -0.52
VPS35-210ENST00000568784 PRNTQ86SH4 94 aa11.77□□□□□ -0.52
VPS35-210ENST00000568784 MUC21A0A0G2JKD1 596 aa11.77□□□□□ -0.53
VPS35-210ENST00000568784 MUC21A0A140T8X8 626 aa11.77□□□□□ -0.53
VPS35-210ENST00000568784 SERTM2A0A1B0GWG4 89 aa11.77□□□□□ -0.53
VPS35-210ENST00000568784 GLRXP35754 106 aa11.77□□□□□ -0.53
VPS35-210ENST00000568784 CA7P43166 264 aa11.77□□□□□ -0.53
VPS35-210ENST00000568784 MUC21Q5SSG8 566 aa11.77□□□□□ -0.53
VPS35-210ENST00000568784 ZADH2Q8N4Q0 377 aa11.77□□□□□ -0.53
VPS35-210ENST00000568784 SLC25A15Q9Y619 301 aa11.77□□□□□ -0.53
VPS35-210ENST00000568784 TDGF1P13385 188 aa11.77□□□□□ -0.53
VPS35-210ENST00000568784 HTR1DP28221 377 aa11.77□□□□□ -0.53
VPS35-210ENST00000568784 DDB2Q92466 427 aa11.77□□□□□ -0.53
VPS35-210ENST00000568784 ASCL3Q9NQ33 180 aa11.77□□□□□ -0.53
VPS35-210ENST00000568784 FAM181BA6NEQ2 426 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 CDX4O14627 284 aaPredicted RBP11.76□□□□□ -0.53
VPS35-210ENST00000568784 LEPROTL1O95214 131 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 COMPP49747 757 aaPredicted RBP11.76□□□□□ -0.53
VPS35-210ENST00000568784 OR8B3Q8NGG8 313 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 ZNF596Q8TC21 504 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 GAL3ST2Q9H3Q3 398 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 S4R3C0 116 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 DCHS1Q96JQ0 3298 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 NUDT3O95989 172 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 IGHV1-46P01743 117 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 VPS25Q9BRG1 176 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 RPUSD1Q9UJJ7 312 aaKnown RBP11.76□□□□□ -0.53
VPS35-210ENST00000568784 LY96Q9Y6Y9 160 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 OTOGLQ3ZCN5 2332 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 COX7A1P24310 79 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 ZNF714Q96N38 554 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 NBEAP1P0C6P0 100 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 FAM87AP0C7U9 286 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 ZNF841Q6ZN19 808 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 SLC25A2Q9BXI2 301 aa11.76□□□□□ -0.53
VPS35-210ENST00000568784 FNDC4Q9H6D8 234 aaPredicted RBP11.76□□□□□ -0.53
VPS35-210ENST00000568784 SP9P0CG40 484 aa11.75□□□□□ -0.53
VPS35-210ENST00000568784 IGLL1P15814 213 aa11.75□□□□□ -0.53
VPS35-210ENST00000568784 VMA21Q3ZAQ7 101 aa11.75□□□□□ -0.53
VPS35-210ENST00000568784 EBLN2Q6P2I7 272 aa11.75□□□□□ -0.53
VPS35-210ENST00000568784 ZNF474Q6S9Z5 364 aaPredicted RBP11.75□□□□□ -0.53
VPS35-210ENST00000568784 GRAMD2BQ96HH9 432 aa11.75□□□□□ -0.53
VPS35-210ENST00000568784 TPSG1Q9NRR2 321 aa11.75□□□□□ -0.53
VPS35-210ENST00000568784 C1orf162Q8NEQ5 155 aaPredicted RBP11.75□□□□□ -0.53
VPS35-210ENST00000568784 GAFA1Q96PS6 74 aa11.75□□□□□ -0.53
VPS35-210ENST00000568784 TMEM70Q9BUB7 260 aa11.75□□□□□ -0.53
VPS35-210ENST00000568784 CNIH1O95406 144 aa11.75□□□□□ -0.53
VPS35-210ENST00000568784 WT1P19544 449 aaPredicted RBP11.75□□□□□ -0.53
VPS35-210ENST00000568784 C2orf83Q53S99 150 aa11.75□□□□□ -0.53
VPS35-210ENST00000568784 LINC00173Q6ZV60 143 aa11.75□□□□□ -0.53
VPS35-210ENST00000568784 CHODLQ9H9P2 273 aa11.75□□□□□ -0.53
VPS35-210ENST00000568784 PLSCR4Q9NRQ2 329 aa11.75□□□□□ -0.53
VPS35-210ENST00000568784 TRAV9-2A0A087WT02 112 aa11.74□□□□□ -0.53
VPS35-210ENST00000568784 LOC389332A0A1B0GUA5 103 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms