RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CFAP126Q5VTH2 177 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 C9orf57Q5W0N0 161 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 FAM166AQ6J272 317 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 EBLN2Q6P2I7 272 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 Q6ZSR3 168 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 TCF23Q7RTU1 214 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 PRSS41Q7RTY9 318 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 TBC1D26Q86UD7 250 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 C1orf158Q8N1D5 194 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 GAPTQ8N292 157 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 C10orf126Q8N4M7 172 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 C3orf22Q8N5N4 141 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 ZNF645Q8N7E2 425 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 LINC01555Q8NAE3 123 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 MORN4Q8NDC4 146 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 GJC3Q8NFK1 279 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 OR9G1Q8NH87 305 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 LMX1AQ8TE12 382 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 TSKUQ8WUA8 353 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 GATAD1Q8WUU5 269 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 PHLDA1Q8WV24 401 aaPredicted RBP2.6□□□□□ -1.99
VPS35-208ENST00000568612 CRYGNQ8WXF5 182 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 ELSPBP1Q96BH3 223 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 LINC00526Q96FQ7 95 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 TIMD4Q96H15 378 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 SCGB3A2Q96PL1 93 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 FAM173AQ9BQD7 235 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 SPRY4Q9C004 299 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 LINC00597Q9H2U6 94 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 FBXL15Q9H469 300 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 ZNF665Q9H7R5 613 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 PELI2Q9HAT8 420 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 PEMTQ9UBM1 199 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 TCF19Q9Y242 345 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 PKIGQ9Y2B9 76 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 RCL1Q9Y2P8 373 aaKnown RBP2.6□□□□□ -1.99
VPS35-208ENST00000568612 HILPDAQ9Y5L2 63 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 CHCHD2Q9Y6H1 151 aaPredicted RBP2.6□□□□□ -1.99
VPS35-208ENST00000568612 GREB1Q4ZG55 1949 aa2.6□□□□□ -1.99
VPS35-208ENST00000568612 NUP214P35658 2090 aaPredicted RBP2.59□□□□□ -1.99
VPS35-208ENST00000568612 TRBV5-5A0A0J9YX44 114 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 TRBV7-7A0A0K0K1E9 115 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 SMIM28A0A1B0GU29 152 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 FAM236AA0A1B0GUQ0 79 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 FAM236BA0A1B0GV22 79 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 MDFIC2A0A1B0GVS7 189 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 CEBPZOSA8MTT3 80 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 SNURFLB1AK76 121 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 J3QQQ9 107 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 OVOL1O14753 267 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 LMX1BO60663 402 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 DPM2O94777 84 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 CPSF4O95639 269 aaKnown RBP2.59□□□□□ -1.99
VPS35-208ENST00000568612 OXTP01178 125 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 HLA-DQA1P01909 254 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 SMIM13P0DJ93 91 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 CRYGAP11844 174 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 PFN2P35080 140 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 IER3P46695 156 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 TAS2R45P59539 299 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 PPP1CAP62136 330 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 SUPT4H1P63272 117 aaKnown RBP2.59□□□□□ -1.99
VPS35-208ENST00000568612 PLGLB1Q02325 96 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 C1orf61Q13536 156 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 KLF5Q13887 457 aaPredicted RBP2.59□□□□□ -1.99
VPS35-208ENST00000568612 EBI3Q14213 229 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 GUSBP1Q15486 140 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 CLEC12BQ2HXU8 276 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 ZNF718Q3SXZ3 478 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 PHLDA2Q53GA4 152 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 FAM78AQ5JUQ0 283 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 FAM120AOSQ5T036 256 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 NOXRED1Q6NXP6 359 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 TMEM14EPQ6UXP3 125 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 TEN1Q86WV5 123 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 SFTPA2Q8IWL1 248 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 RYBPQ8N488 228 aaPredicted RBP2.59□□□□□ -1.99
VPS35-208ENST00000568612 NEXN-AS1Q8NBZ9 246 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 ZPLD1Q8TCW7 415 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 MYOZ3Q8TDC0 251 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 ACER1Q8TDN7 264 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 H1FXQ92522 213 aaKnown RBP2.59□□□□□ -1.99
VPS35-208ENST00000568612 FGF13Q92913 245 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 RAB37Q96AX2 223 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 ZNF689Q96CS4 500 aaPredicted RBP2.59□□□□□ -1.99
VPS35-208ENST00000568612 ADAT3Q96EY9 351 aaPredicted RBP2.59□□□□□ -1.99
VPS35-208ENST00000568612 ABHD14BQ96IU4 210 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 LINC00479Q96M42 142 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 C18orf15Q96N68 181 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 APOOQ9BUR5 198 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 TMEM147Q9BVK8 224 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 RNASE7Q9H1E1 156 aaKnown RBP2.59□□□□□ -1.99
VPS35-208ENST00000568612 CXCL16Q9H2A7 254 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 C11orf1Q9H5F2 150 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 RETNQ9HD89 108 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 IL36BQ9NZH7 164 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 CKLFQ9UBR5 152 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 FZR1Q9UM11 496 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 ARL2-SNX15V9GYD0 113 aa2.59□□□□□ -1.99
VPS35-208ENST00000568612 SCN2AQ99250 2005 aa2.59□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms