RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 TRAV30A0A087WSZ9 112 aa10.92□□□□□ -0.66
CLN3-213ENST00000565047 A0A0J9YWU9 116 aa10.92□□□□□ -0.66
CLN3-213ENST00000565047 NOL3O60936 208 aaKnown RBP10.92□□□□□ -0.66
CLN3-213ENST00000565047 AKR1C4P17516 323 aa10.92□□□□□ -0.66
CLN3-213ENST00000565047 ATF4P18848 351 aaPredicted RBP10.92□□□□□ -0.66
CLN3-213ENST00000565047 NPPCP23582 126 aa10.92□□□□□ -0.66
CLN3-213ENST00000565047 CCR6P51684 374 aa10.92□□□□□ -0.66
CLN3-213ENST00000565047 YPEL3P61236 119 aaPredicted RBP10.92□□□□□ -0.66
CLN3-213ENST00000565047 LYG2Q86SG7 212 aa10.92□□□□□ -0.66
CLN3-213ENST00000565047 STPG3Q8N7X2 389 aa10.92□□□□□ -0.66
CLN3-213ENST00000565047 KMT2AQ03164 3969 aa10.91□□□□□ -0.66
CLN3-213ENST00000565047 RPS10-NUDT3A0A1W2PQS6 291 aa10.91□□□□□ -0.66
CLN3-213ENST00000565047 K7EQG2 157 aa10.91□□□□□ -0.66
CLN3-213ENST00000565047 SLC25A4P12235 298 aa10.91□□□□□ -0.66
CLN3-213ENST00000565047 PAFAH1B2P68402 229 aa10.91□□□□□ -0.66
CLN3-213ENST00000565047 SMCO1Q147U7 214 aa10.91□□□□□ -0.66
CLN3-213ENST00000565047 RBMS2Q15434 407 aaKnown RBP10.91□□□□□ -0.66
CLN3-213ENST00000565047 LRTM2Q8N967 370 aa10.91□□□□□ -0.66
CLN3-213ENST00000565047 DCANP1Q8TF63 244 aa10.91□□□□□ -0.66
CLN3-213ENST00000565047 CSTL1Q9H114 145 aa10.91□□□□□ -0.66
CLN3-213ENST00000565047 CACFD1Q9UGQ2 172 aa10.91□□□□□ -0.66
CLN3-213ENST00000565047 CEBPZOSA8MTT3 80 aa10.9□□□□□ -0.66
CLN3-213ENST00000565047 ZNF701M0R085 212 aaPredicted RBP10.9□□□□□ -0.66
CLN3-213ENST00000565047 NPY1RP25929 384 aa10.9□□□□□ -0.66
CLN3-213ENST00000565047 RND2P52198 227 aa10.9□□□□□ -0.66
CLN3-213ENST00000565047 PYDC2Q56P42 97 aa10.9□□□□□ -0.66
CLN3-213ENST00000565047 LGI3Q8N145 548 aa10.9□□□□□ -0.66
CLN3-213ENST00000565047 TOMM5Q8N4H5 51 aa10.9□□□□□ -0.66
CLN3-213ENST00000565047 OR1S2Q8NGQ3 325 aa10.9□□□□□ -0.66
CLN3-213ENST00000565047 DEDD2Q8WXF8 326 aa10.9□□□□□ -0.66
CLN3-213ENST00000565047 NPIPB3Q92617 1050 aa10.9□□□□□ -0.66
CLN3-213ENST00000565047 METTL26Q96S19 204 aa10.9□□□□□ -0.66
CLN3-213ENST00000565047 RBKSQ9H477 322 aa10.9□□□□□ -0.66
CLN3-213ENST00000565047 U3KQ87 197 aa10.9□□□□□ -0.66
CLN3-213ENST00000565047 VPS13DQ5THJ4 4388 aa10.89□□□□□ -0.67
CLN3-213ENST00000565047 A0A1W2PS18 150 aa10.89□□□□□ -0.67
CLN3-213ENST00000565047 GIG44P09565 113 aaPredicted RBP10.89□□□□□ -0.67
CLN3-213ENST00000565047 OR10J1P30954 320 aa10.89□□□□□ -0.67
CLN3-213ENST00000565047 P2RY1P47900 373 aa10.89□□□□□ -0.67
CLN3-213ENST00000565047 DEFB131AP59861 70 aa10.89□□□□□ -0.67
CLN3-213ENST00000565047 USF2Q15853 346 aaPredicted RBP10.89□□□□□ -0.67
CLN3-213ENST00000565047 TMEM128Q5BJH2 165 aa10.89□□□□□ -0.67
CLN3-213ENST00000565047 DTD1Q8TEA8 209 aa10.89□□□□□ -0.67
CLN3-213ENST00000565047 GLMPQ8WWB7 406 aa10.89□□□□□ -0.67
CLN3-213ENST00000565047 TMEM231Q9H6L2 316 aa10.89□□□□□ -0.67
CLN3-213ENST00000565047 IGKV1D-37A0A075B6S9 117 aa10.88□□□□□ -0.67
CLN3-213ENST00000565047 MPTX1A8MV57 137 aa10.88□□□□□ -0.67
CLN3-213ENST00000565047 FAUP35544 74 aaKnown RBP10.88□□□□□ -0.67
CLN3-213ENST00000565047 AP3S2P59780 193 aa10.88□□□□□ -0.67
CLN3-213ENST00000565047 SRPXP78539 464 aa10.88□□□□□ -0.67
CLN3-213ENST00000565047 LEMD1Q68G75 181 aa10.88□□□□□ -0.67
CLN3-213ENST00000565047 C16orf54Q6UWD8 224 aa10.88□□□□□ -0.67
CLN3-213ENST00000565047 Q8WTZ3 238 aa10.88□□□□□ -0.67
CLN3-213ENST00000565047 GRAMD2BQ96HH9 432 aa10.88□□□□□ -0.67
CLN3-213ENST00000565047 SLC25A21Q9BQT8 299 aaPredicted RBP10.88□□□□□ -0.67
CLN3-213ENST00000565047 SRRQ9GZT4 340 aa10.88□□□□□ -0.67
CLN3-213ENST00000565047 DUXBA0A1W2PPF3 345 aa10.87□□□□□ -0.67
CLN3-213ENST00000565047 TOMM40O96008 361 aa10.87□□□□□ -0.67
CLN3-213ENST00000565047 SLC25A6P12236 298 aa10.87□□□□□ -0.67
CLN3-213ENST00000565047 ANXA3P12429 323 aa10.87□□□□□ -0.67
CLN3-213ENST00000565047 ATP5IP56385 69 aaPredicted RBP10.87□□□□□ -0.67
CLN3-213ENST00000565047 ETFRF1Q6IPR1 90 aa10.87□□□□□ -0.67
CLN3-213ENST00000565047 NOXA1Q86UR1 476 aa10.87□□□□□ -0.67
CLN3-213ENST00000565047 GATAD1Q8WUU5 269 aa10.87□□□□□ -0.67
CLN3-213ENST00000565047 SDHCQ99643 169 aaPredicted RBP10.87□□□□□ -0.67
CLN3-213ENST00000565047 DNASE2O00115 360 aaPredicted RBP10.86□□□□□ -0.67
CLN3-213ENST00000565047 BUB3O43684 328 aa10.86□□□□□ -0.67
CLN3-213ENST00000565047 SCGB2A1O75556 95 aa10.86□□□□□ -0.67
CLN3-213ENST00000565047 SFT2D2O95562 160 aa10.86□□□□□ -0.67
CLN3-213ENST00000565047 IFNA10P01566 189 aa10.86□□□□□ -0.67
CLN3-213ENST00000565047 HNRNPCP07910 306 aaKnown RBP eCLIP10.86□□□□□ -0.67
CLN3-213ENST00000565047 PSG1P11464 419 aa10.86□□□□□ -0.67
CLN3-213ENST00000565047 GPX4P36969 197 aaPredicted RBP10.86□□□□□ -0.67
CLN3-213ENST00000565047 RPL11P62913 178 aaKnown RBP10.86□□□□□ -0.67
CLN3-213ENST00000565047 PPP1R1AQ13522 171 aa10.86□□□□□ -0.67
CLN3-213ENST00000565047 GAMTQ14353 236 aa10.86□□□□□ -0.67
CLN3-213ENST00000565047 BAK1Q16611 211 aa10.86□□□□□ -0.67
CLN3-213ENST00000565047 TMED4Q7Z7H5 227 aa10.86□□□□□ -0.67
CLN3-213ENST00000565047 TRPT1Q86TN4 253 aaKnown RBP10.86□□□□□ -0.67
CLN3-213ENST00000565047 ACY3Q96HD9 319 aa10.86□□□□□ -0.67
CLN3-213ENST00000565047 PRSS46E5RG02 174 aa10.85□□□□□ -0.67
CLN3-213ENST00000565047 IL4P05112 153 aa10.85□□□□□ -0.67
CLN3-213ENST00000565047 RD3LP0DJH9 198 aa10.85□□□□□ -0.67
CLN3-213ENST00000565047 S100A5P33763 92 aa10.85□□□□□ -0.67
CLN3-213ENST00000565047 CEMP1Q6PRD7 247 aaPredicted RBP10.85□□□□□ -0.67
CLN3-213ENST00000565047 STXBP6Q8NFX7 210 aa10.85□□□□□ -0.67
CLN3-213ENST00000565047 RABAC1Q9UI14 185 aa10.85□□□□□ -0.67
CLN3-213ENST00000565047 PIGBOS1A0A0B4J2F0 54 aa10.84□□□□□ -0.67
CLN3-213ENST00000565047 CCDC160A6NGH7 325 aa10.84□□□□□ -0.67
CLN3-213ENST00000565047 FAM90A26D6RGX4 464 aa10.84□□□□□ -0.67
CLN3-213ENST00000565047 JTBO76095 146 aa10.84□□□□□ -0.67
CLN3-213ENST00000565047 OR1S1Q8NH92 325 aa10.84□□□□□ -0.67
CLN3-213ENST00000565047 RARRES2Q99969 163 aa10.84□□□□□ -0.67
CLN3-213ENST00000565047 TMED3Q9Y3Q3 217 aa10.84□□□□□ -0.67
CLN3-213ENST00000565047 DNAH10Q8IVF4 4471 aa10.84□□□□□ -0.67
CLN3-213ENST00000565047 IGKV1OR2-108A0A075B7D4 117 aa10.83□□□□□ -0.68
CLN3-213ENST00000565047 HELTA6NFD8 242 aa10.83□□□□□ -0.68
CLN3-213ENST00000565047 CA1P00915 261 aaPredicted RBP10.83□□□□□ -0.68
CLN3-213ENST00000565047 ZNF688P0C7X2 276 aa10.83□□□□□ -0.68
CLN3-213ENST00000565047 VAMP1P23763 118 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms