RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 MUC21A0A0G2JKD1 596 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 A0A0J9YW62 118 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 MUC21A0A140T8X8 626 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 A0A1W2PS18 150 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 PLAC8L1A1L4L8 177 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 NDUFC2-KCTD14E9PQ53 114 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 ZNF253O75346 499 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 APOMO95445 188 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 PYYP10082 97 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 BTCP35070 178 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 RPL22P35268 128 aaKnown RBP3.98□□□□□ -1.77
VPS35-205ENST00000563984 SAA4P35542 130 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 PPICP45877 212 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 MTPNP58546 118 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 FKBP1AP62942 108 aaKnown RBP3.98□□□□□ -1.77
VPS35-205ENST00000563984 OR7A5Q15622 319 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 MS4A13Q5J8X5 152 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 MUC21Q5SSG8 566 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 MRPL2Q5T653 305 aaKnown RBP3.98□□□□□ -1.77
VPS35-205ENST00000563984 LAIR2Q6ISS4 152 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 ZNF493Q6ZR52 646 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 TOMM5Q8N4H5 51 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 SIGLECL1Q8N7X8 197 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 OR52P1PQ8NH57 321 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 IMUPQ9GZP8 106 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 AICDAQ9GZX7 198 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 AMMECR1Q9Y4X0 333 aaPredicted RBP3.98□□□□□ -1.77
VPS35-205ENST00000563984 PXMP4Q9Y6I8 212 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 ASXL1Q8IXJ9 1541 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 SCN1AP35498 2009 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 NUP205Q92621 2012 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 DOCK2Q92608 1830 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 IGLV3-22A0A075B6J6 115 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 SMIM26A0A096LP01 95 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 PRR32B1ATL7 298 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 F6UB75 175 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 J3QT63 122 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 GP1BBP13224 206 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 CCL1P22362 96 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 LIM2P55344 173 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 SPRNQ5BIV9 151 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 TRNP1Q6NT89 227 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 C22orf39Q6P5X5 142 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 TRAPPC6BQ86SZ2 158 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 MSRB3Q8IXL7 192 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 PIANPQ8IYJ0 282 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 METTL27Q8N6F8 245 aaPredicted RBP3.97□□□□□ -1.77
VPS35-205ENST00000563984 LY6G5BQ8NDX9 201 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 OR10G8Q8NGN5 311 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 RPS4Y2Q8TD47 263 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 BRK1Q8WUW1 75 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 PPDPFLQ8WWR9 84 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 IL1F10Q8WWZ1 152 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 TMEM230Q96A57 120 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 PRELID3AQ96N28 172 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 SPRY4Q9C004 299 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 AGPAT4-IT1Q9H0P7 198 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 ARRDC1-AS1Q9H2J1 176 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 BCL2L10Q9HD36 194 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 VSIG4Q9Y279 399 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 NEUROG3Q9Y4Z2 214 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 PEAK1Q9H792 1746 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 ARHGEF5Q12774 1597 aa3.97□□□□□ -1.77
VPS35-205ENST00000563984 UTRNP46939 3433 aa3.96□□□□□ -1.77
VPS35-205ENST00000563984 MEGF6O75095 1541 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 DLC1Q96QB1 1528 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 RGPD1P0DJD0 1748 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 NUP188Q5SRE5 1749 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 VWA8A3KMH1 1905 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 MICAL3Q7RTP6 2002 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 CCDC88CQ9P219 2028 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 TRAV12-2A0A075B6T6 113 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 A0A0A6YYD4 124 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 LOC285095A0A1B0GVY8 99 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 FAM24AA6NFZ4 105 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 A8MWV9 139 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 C8orf87E5RJ46 101 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 SYS1-DBNDD2H3BUS1 97 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 H3BUT2 72 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 EPPINO95925 133 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 CD3DP04234 171 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 HSPB1P04792 205 aaKnown RBP3.96□□□□□ -1.78
VPS35-205ENST00000563984 ZNF688P0C7X2 276 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 ZNF286BP0CG31 522 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 HLA-DOBP13765 273 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 MPV17LQ2QL34 196 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 OR5H2Q8NGV7 314 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 METTL26Q96S19 204 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 GPX7Q96SL4 187 aaPredicted RBP3.96□□□□□ -1.78
VPS35-205ENST00000563984 C20orf78Q9BR46 151 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 PAXXQ9BUH6 204 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 EIF5A2Q9GZV4 153 aaKnown RBP3.96□□□□□ -1.78
VPS35-205ENST00000563984 OTORQ9NRC9 128 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 RBM12B-AS1Q9P1G2 102 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 OR2W1Q9Y3N9 320 aa3.96□□□□□ -1.78
VPS35-205ENST00000563984 USP32Q8NFA0 1604 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 MON2Q7Z3U7 1717 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 NWD2Q9ULI1 1742 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 BRWD3Q6RI45 1802 aa3.95□□□□□ -1.78
VPS35-205ENST00000563984 MYO10Q9HD67 2058 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms