RNA–Protein interactions for RNA: ENST00000563485.2

HMGB1P33-201, Transcript of high mobility group box 1 pseudogene 33, humanhuman

BASIC

Gene HMGB1P33, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P33-201ENST00000563485 MED1Q15648 1581 aaPredicted RBP0.73□□□□□ -2.29
HMGB1P33-201ENST00000563485 PLXND1Q9Y4D7 1925 aa0.73□□□□□ -2.29
HMGB1P33-201ENST00000563485 SDK1Q7Z5N4 2213 aa0.73□□□□□ -2.29
HMGB1P33-201ENST00000563485 RP1P56715 2156 aa0.73□□□□□ -2.29
HMGB1P33-201ENST00000563485 RP1L1Q8IWN7 2480 aaPredicted RBP0.73□□□□□ -2.29
HMGB1P33-201ENST00000563485 PXDNLA1KZ92 1463 aa0.73□□□□□ -2.29
HMGB1P33-201ENST00000563485 DENND4CQ5VZ89 1909 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 FREM1Q5H8C1 2179 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 IGKV1-9A0A0C4DH69 117 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 A0A1B0GVG6 124 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 FUOMA2VDF0 154 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 RFPL4AA6NLU0 287 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 PPP5D1E7EU14 171 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 RFPL4AL1F8VTS6 287 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 H7C1C5 153 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 SDCBPO00560 298 aaPredicted RBP0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 GGCTO75223 188 aaKnown RBP0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 ZNF737O75373 536 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 PGLYRP1O75594 196 aaPredicted RBP0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 NDUFC2O95298 119 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 PMP2P02689 132 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 TRGC1P0CF51 173 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 RNASE4P34096 147 aaKnown RBP0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 PHBP35232 272 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 PPP1R2P41236 205 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 AKR1C3P42330 323 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 ATP5G3P48201 142 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 GNG10P50151 68 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 TCTAP57738 103 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 LCN6P62502 163 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 GNG3P63215 75 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 TFAMQ00059 246 aaKnown RBP0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 ELOBQ15370 118 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 RHEBQ15382 184 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 TSNQ15631 228 aaKnown RBP0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 NNATQ16517 81 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 ARHGAP11BQ3KRB8 267 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 PPP1R2P3Q6NXS1 205 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 C22orf39Q6P5X5 142 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 Q6ZQT0 140 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 GRINAQ7Z429 371 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 STX12Q86Y82 276 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 ZNF439Q8NDP4 499 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 OR13C6PQ8NH95 151 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 NEK7Q8TDX7 302 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 FAM172AQ8WUF8 416 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 PLEKHB2Q96CS7 222 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 MALSU1Q96EH3 234 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 YPEL2Q96QA6 119 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 LYSMD1Q96S90 227 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 SERPINI1Q99574 410 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 LINC00467Q9BRT7 94 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 DDA1Q9BW61 102 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 OSTCQ9NRP0 149 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 ACER3Q9NUN7 267 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 AMMECR1Q9Y4X0 333 aaPredicted RBP0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 V9GYQ6 96 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 UBR2Q8IWV8 1755 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 CR1P17927 2039 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 UHRF1BP1Q6BDS2 1440 aa0.72□□□□□ -2.29
HMGB1P33-201ENST00000563485 SYNMO15061 1565 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 SCN10AQ9Y5Y9 1956 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 TRGV10A0A0A0MS01 117 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 DUXBA0A1W2PPF3 345 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 M0R378 163 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 HMGB3O15347 200 aaKnown RBP0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 CYB5BO43169 146 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 OR2T1O43869 369 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 MRPS14O60783 128 aaKnown RBP0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 PPBPP02775 128 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 SHBGP04278 402 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 ZNF705BP0CI00 300 aaPredicted RBP0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 SRIP30626 198 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 CRYBA4P53673 196 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 AQP4P55087 323 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 NCALDP61601 193 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 PDE6HQ13956 83 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 TMEM78Q5T7P6 136 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 FAM173BQ6P4H8 233 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 DPPA3Q6W0C5 159 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 AAED1Q7RTV5 226 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 S100A7AQ86SG5 101 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 PHF13Q86YI8 300 aaPredicted RBP0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 OR4E2Q8NGC2 313 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 OR5A1Q8NGJ0 315 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 OR8D4Q8NGM9 314 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 OR13D1Q8NGV5 346 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 OR10J5Q8NHC4 309 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 HIST1H2BLQ99880 126 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 TMEM126AQ9H061 195 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 TAS2R4Q9NYW5 299 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 LAMTOR3Q9UHA4 124 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 ATPIF1Q9UII2 106 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 SSR3Q9UNL2 185 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 ARHGEF28Q8N1W1 1705 aaKnown RBP0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 NCAPD3P42695 1498 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 GBF1Q92538 1859 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 MIA2Q96PC5 1412 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 HEATR5BQ9P2D3 2071 aa0.71□□□□□ -2.3
HMGB1P33-201ENST00000563485 HECW1Q76N89 1606 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms