RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ATP5SQ99766 215 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 CHRDL1Q9BU40 450 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 ZNF747Q9BV97 191 aa12.79□□□□□ -0.36
VPS4A-202ENST00000562754 STAB1Q9NY15 2570 aa12.78□□□□□ -0.36
VPS4A-202ENST00000562754 IGKV1D-37A0A075B6S9 117 aa12.78□□□□□ -0.36
VPS4A-202ENST00000562754 BMPR1BO00238 502 aa12.78□□□□□ -0.36
VPS4A-202ENST00000562754 GNG7O60262 68 aa12.78□□□□□ -0.36
VPS4A-202ENST00000562754 IGKV1-17P01599 117 aa12.78□□□□□ -0.36
VPS4A-202ENST00000562754 CLEC3BP05452 202 aa12.78□□□□□ -0.36
VPS4A-202ENST00000562754 IGLC1P0CG04 106 aa12.78□□□□□ -0.36
VPS4A-202ENST00000562754 ADMP35318 185 aa12.78□□□□□ -0.36
VPS4A-202ENST00000562754 LGALSLQ3ZCW2 172 aaPredicted RBP12.78□□□□□ -0.36
VPS4A-202ENST00000562754 TREML4Q6UXN2 200 aa12.78□□□□□ -0.36
VPS4A-202ENST00000562754 TMEM144Q7Z5S9 345 aa12.78□□□□□ -0.36
VPS4A-202ENST00000562754 NDUFA11Q86Y39 141 aa12.78□□□□□ -0.36
VPS4A-202ENST00000562754 C9orf62Q8N4C0 152 aa12.78□□□□□ -0.36
VPS4A-202ENST00000562754 PEF1Q9UBV8 284 aaKnown RBP12.78□□□□□ -0.36
VPS4A-202ENST00000562754 IGHV4OR15-8A0A075B7B6 117 aa12.77□□□□□ -0.37
VPS4A-202ENST00000562754 A0A087WW49 117 aa12.77□□□□□ -0.37
VPS4A-202ENST00000562754 TGOLN2O43493 480 aa12.77□□□□□ -0.37
VPS4A-202ENST00000562754 CTSGP08311 255 aa12.77□□□□□ -0.37
VPS4A-202ENST00000562754 OR10J1P30954 320 aa12.77□□□□□ -0.37
VPS4A-202ENST00000562754 ARL3P36405 182 aa12.77□□□□□ -0.37
VPS4A-202ENST00000562754 NSUN5P1Q3KNT7 163 aa12.77□□□□□ -0.37
VPS4A-202ENST00000562754 TIGITQ495A1 244 aa12.77□□□□□ -0.37
VPS4A-202ENST00000562754 LAMTOR1Q6IAA8 161 aa12.77□□□□□ -0.37
VPS4A-202ENST00000562754 WDR83OSQ9Y284 106 aa12.77□□□□□ -0.37
VPS4A-202ENST00000562754 LSM4Q9Y4Z0 139 aaKnown RBP12.77□□□□□ -0.37
VPS4A-202ENST00000562754 A0A0D9SG52 128 aa12.76□□□□□ -0.37
VPS4A-202ENST00000562754 DFFBO76075 338 aa12.76□□□□□ -0.37
VPS4A-202ENST00000562754 FAM209BQ5JX69 171 aa12.76□□□□□ -0.37
VPS4A-202ENST00000562754 TMUB2Q71RG4 321 aa12.76□□□□□ -0.37
VPS4A-202ENST00000562754 C3orf56Q8N813 242 aa12.76□□□□□ -0.37
VPS4A-202ENST00000562754 RAX2Q96IS3 184 aa12.76□□□□□ -0.37
VPS4A-202ENST00000562754 DUX3Q96PT4 197 aa12.76□□□□□ -0.37
VPS4A-202ENST00000562754 NPVFQ9HCQ7 196 aa12.76□□□□□ -0.37
VPS4A-202ENST00000562754 GAR1Q9NY12 217 aaKnown RBP12.76□□□□□ -0.37
VPS4A-202ENST00000562754 ZFP92A6NM28 416 aa12.75□□□□□ -0.37
VPS4A-202ENST00000562754 HSPB1P04792 205 aaKnown RBP12.75□□□□□ -0.37
VPS4A-202ENST00000562754 SPSB3Q6PJ21 355 aa12.75□□□□□ -0.37
VPS4A-202ENST00000562754 TRGV9Q99603 122 aa12.75□□□□□ -0.37
VPS4A-202ENST00000562754 MGST2Q99735 147 aa12.75□□□□□ -0.37
VPS4A-202ENST00000562754 ARL6Q9H0F7 186 aa12.75□□□□□ -0.37
VPS4A-202ENST00000562754 CYTL1Q9NRR1 136 aa12.75□□□□□ -0.37
VPS4A-202ENST00000562754 TRAV30A0A087WSZ9 112 aa12.74□□□□□ -0.37
VPS4A-202ENST00000562754 IGHV3-35A0A0C4DH35 117 aa12.74□□□□□ -0.37
VPS4A-202ENST00000562754 NUPL2O15504 423 aaKnown RBP12.74□□□□□ -0.37
VPS4A-202ENST00000562754 BCL2L11O43521 198 aa12.74□□□□□ -0.37
VPS4A-202ENST00000562754 FGF7P21781 194 aa12.74□□□□□ -0.37
VPS4A-202ENST00000562754 ZNF90Q03938 601 aa12.74□□□□□ -0.37
VPS4A-202ENST00000562754 FHL3Q13643 280 aa12.74□□□□□ -0.37
VPS4A-202ENST00000562754 RPL7L1Q6DKI1 246 aaKnown RBP12.74□□□□□ -0.37
VPS4A-202ENST00000562754 TEPPQ6URK8 271 aa12.74□□□□□ -0.37
VPS4A-202ENST00000562754 BTNL8Q6UX41 500 aa12.74□□□□□ -0.37
VPS4A-202ENST00000562754 OR11H1Q8NG94 326 aa12.74□□□□□ -0.37
VPS4A-202ENST00000562754 OR1N2Q8NGR9 330 aa12.74□□□□□ -0.37
VPS4A-202ENST00000562754 ARPC5LQ9BPX5 153 aa12.74□□□□□ -0.37
VPS4A-202ENST00000562754 WDR61Q9GZS3 305 aaKnown RBP12.74□□□□□ -0.37
VPS4A-202ENST00000562754 LINC01619G3V211 115 aa12.73□□□□□ -0.37
VPS4A-202ENST00000562754 GGCTO75223 188 aaKnown RBP12.73□□□□□ -0.37
VPS4A-202ENST00000562754 OR2C1O95371 312 aa12.73□□□□□ -0.37
VPS4A-202ENST00000562754 ZNF616Q08AN1 781 aa12.73□□□□□ -0.37
VPS4A-202ENST00000562754 TMEM182Q6ZP80 229 aaPredicted RBP12.73□□□□□ -0.37
VPS4A-202ENST00000562754 GGTLC1Q9BX51 225 aa12.73□□□□□ -0.37
VPS4A-202ENST00000562754 PARD6GQ9BYG4 376 aaPredicted RBP12.73□□□□□ -0.37
VPS4A-202ENST00000562754 CCL24O00175 119 aa12.72□□□□□ -0.37
VPS4A-202ENST00000562754 TAAR5O14804 337 aa12.72□□□□□ -0.37
VPS4A-202ENST00000562754 AGPAT2O15120 278 aa12.72□□□□□ -0.37
VPS4A-202ENST00000562754 IFNA5P01569 189 aa12.72□□□□□ -0.37
VPS4A-202ENST00000562754 HOXD3P31249 432 aaPredicted RBP12.72□□□□□ -0.37
VPS4A-202ENST00000562754 SLURP1P55000 103 aa12.72□□□□□ -0.37
VPS4A-202ENST00000562754 YPEL3P61236 119 aaPredicted RBP12.72□□□□□ -0.37
VPS4A-202ENST00000562754 ZNF266Q14584 549 aa12.72□□□□□ -0.37
VPS4A-202ENST00000562754 SHISA2Q6UWI4 295 aa12.72□□□□□ -0.37
VPS4A-202ENST00000562754 CYP2G1PQ6ZSU1 146 aa12.72□□□□□ -0.37
VPS4A-202ENST00000562754 SLC45A2Q9UMX9 530 aa12.72□□□□□ -0.37
VPS4A-202ENST00000562754 WNK1Q9H4A3 2382 aa12.71□□□□□ -0.37
VPS4A-202ENST00000562754 KANTRA0A1W2PQU2 76 aa12.71□□□□□ -0.37
VPS4A-202ENST00000562754 SCGB2A1O75556 95 aa12.71□□□□□ -0.37
VPS4A-202ENST00000562754 TOMM40O96008 361 aa12.71□□□□□ -0.37
VPS4A-202ENST00000562754 HNRNPCP07910 306 aaKnown RBP eCLIP12.71□□□□□ -0.37
VPS4A-202ENST00000562754 PSG1P11464 419 aa12.71□□□□□ -0.37
VPS4A-202ENST00000562754 GATA2P23769 480 aaPredicted RBP12.71□□□□□ -0.37
VPS4A-202ENST00000562754 CAMLGP49069 296 aa12.71□□□□□ -0.37
VPS4A-202ENST00000562754 OPCMLQ14982 345 aa12.71□□□□□ -0.37
VPS4A-202ENST00000562754 RPEL1Q2QD12 228 aa12.71□□□□□ -0.37
VPS4A-202ENST00000562754 ZNF600Q6ZNG1 722 aa12.71□□□□□ -0.37
VPS4A-202ENST00000562754 DPF1Q92782 380 aa12.71□□□□□ -0.37
VPS4A-202ENST00000562754 RCC1LQ96I51 464 aaKnown RBP12.71□□□□□ -0.37
VPS4A-202ENST00000562754 RSG1Q9BU20 258 aa12.71□□□□□ -0.37
VPS4A-202ENST00000562754 NPCDR1Q9BY65 106 aa12.71□□□□□ -0.37
VPS4A-202ENST00000562754 BOLA1Q9Y3E2 137 aa12.71□□□□□ -0.37
VPS4A-202ENST00000562754 RFNGQ9Y644 331 aa12.71□□□□□ -0.37
VPS4A-202ENST00000562754 BORCS7-ASMTA0A0B4J1R7 106 aa12.7□□□□□ -0.38
VPS4A-202ENST00000562754 MPDU1O75352 247 aa12.7□□□□□ -0.38
VPS4A-202ENST00000562754 ZP3P21754 424 aa12.7□□□□□ -0.38
VPS4A-202ENST00000562754 RELQ04864 619 aaPredicted RBP12.7□□□□□ -0.38
VPS4A-202ENST00000562754 MIC13Q5XKP0 118 aa12.7□□□□□ -0.38
VPS4A-202ENST00000562754 UNQ9165/PRO28630Q6UXU0 137 aa12.7□□□□□ -0.38
VPS4A-202ENST00000562754 HSD17B11Q8NBQ5 300 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms