RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 C2orf70A6NJV1 201 aa7.42□□□□□ -1.22
CLK3-208ENST00000562626 A8MWP6 167 aa7.42□□□□□ -1.22
CLK3-208ENST00000562626 G3V3Q6 166 aa7.42□□□□□ -1.22
CLK3-208ENST00000562626 LGALS9O00182 355 aa7.42□□□□□ -1.22
CLK3-208ENST00000562626 SAP30O75446 220 aa7.42□□□□□ -1.22
CLK3-208ENST00000562626 DEDDO75618 318 aa7.42□□□□□ -1.22
CLK3-208ENST00000562626 CST7O76096 145 aa7.42□□□□□ -1.22
CLK3-208ENST00000562626 MPC2O95563 127 aa7.42□□□□□ -1.22
CLK3-208ENST00000562626 GPX4P36969 197 aaPredicted RBP7.42□□□□□ -1.22
CLK3-208ENST00000562626 TAS2R30P59541 319 aa7.42□□□□□ -1.22
CLK3-208ENST00000562626 KPRPQ5T749 579 aaPredicted RBP7.42□□□□□ -1.22
CLK3-208ENST00000562626 SPSB3Q6PJ21 355 aa7.42□□□□□ -1.22
CLK3-208ENST00000562626 TOMM20LQ6UXN7 152 aa7.42□□□□□ -1.22
CLK3-208ENST00000562626 TMEM182Q6ZP80 229 aaPredicted RBP7.42□□□□□ -1.22
CLK3-208ENST00000562626 TMEM116Q8NCL8 245 aa7.42□□□□□ -1.22
CLK3-208ENST00000562626 ATP6V0BQ99437 205 aa7.42□□□□□ -1.22
CLK3-208ENST00000562626 RYR3Q15413 4870 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 AGRNO00468 2067 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 IGHV3OR16-13A0A075B7E8 117 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 IGHV3-74A0A0B4J1X5 117 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 RPS10-NUDT3A0A1W2PQS6 291 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 L7N2F9 121 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 NDUFA4O00483 81 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 IGLV1-51P01701 117 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 APOHP02749 345 aaPredicted RBP7.41□□□□□ -1.22
CLK3-208ENST00000562626 SLC25A4P12235 298 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 FOLR2P14207 255 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 OR10J1P30954 320 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 NPBWR1P48145 328 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 ATP5IP56385 69 aaPredicted RBP7.41□□□□□ -1.22
CLK3-208ENST00000562626 RAB11AP62491 216 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 VAMP2P63027 116 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 ZNF90Q03938 601 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 C9orf66Q5T8R8 295 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 Q6ZNX1 250 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 TMEM252Q8N6L7 170 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 C20orf24Q9BUV8 137 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 LYRM2Q9NU23 88 aaPredicted RBP7.41□□□□□ -1.22
CLK3-208ENST00000562626 MBD2Q9UBB5 411 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 MLXQ9UH92 298 aa7.41□□□□□ -1.22
CLK3-208ENST00000562626 PUS1Q9Y606 427 aaKnown RBP eCLIP7.41□□□□□ -1.22
CLK3-208ENST00000562626 SMLR1H3BR10 107 aa7.4□□□□□ -1.22
CLK3-208ENST00000562626 NUPL2O15504 423 aaKnown RBP7.4□□□□□ -1.22
CLK3-208ENST00000562626 SCAF4O95104 1147 aaKnown RBP7.4□□□□□ -1.22
CLK3-208ENST00000562626 CBLN1P23435 193 aa7.4□□□□□ -1.22
CLK3-208ENST00000562626 GATA2P23769 480 aaPredicted RBP7.4□□□□□ -1.22
CLK3-208ENST00000562626 BCAP31P51572 246 aa7.4□□□□□ -1.22
CLK3-208ENST00000562626 CAV2P51636 162 aa7.4□□□□□ -1.22
CLK3-208ENST00000562626 NHLH2Q02577 135 aa7.4□□□□□ -1.22
CLK3-208ENST00000562626 EGFEM1PQ0D2K5 195 aa7.4□□□□□ -1.22
CLK3-208ENST00000562626 ETFRF1Q6IPR1 90 aa7.4□□□□□ -1.22
CLK3-208ENST00000562626 ZNF600Q6ZNG1 722 aa7.4□□□□□ -1.22
CLK3-208ENST00000562626 NOXA1Q86UR1 476 aa7.4□□□□□ -1.22
CLK3-208ENST00000562626 LILRB2Q8N423 598 aa7.4□□□□□ -1.22
CLK3-208ENST00000562626 TMEM217Q8N7C4 229 aa7.4□□□□□ -1.22
CLK3-208ENST00000562626 STPG3Q8N7X2 389 aa7.4□□□□□ -1.22
CLK3-208ENST00000562626 THAP8Q8NA92 274 aa7.4□□□□□ -1.22
CLK3-208ENST00000562626 SLC35E1Q96K37 410 aa7.4□□□□□ -1.22
CLK3-208ENST00000562626 PRKDCP78527 4128 aaKnown RBP7.4□□□□□ -1.22
CLK3-208ENST00000562626 A0A1B0GVG6 124 aa7.39□□□□□ -1.23
CLK3-208ENST00000562626 WI2-2373I1.2A0A1W2PRP0 233 aa7.39□□□□□ -1.23
CLK3-208ENST00000562626 C8orf88P0DMB2 117 aa7.39□□□□□ -1.23
CLK3-208ENST00000562626 PSG1P11464 419 aa7.39□□□□□ -1.23
CLK3-208ENST00000562626 LYL1P12980 280 aa7.39□□□□□ -1.23
CLK3-208ENST00000562626 RPP30P78346 268 aaKnown RBP7.39□□□□□ -1.23
CLK3-208ENST00000562626 DLK1P80370 383 aa7.39□□□□□ -1.23
CLK3-208ENST00000562626 EWSR1Q01844 656 aaKnown RBP eCLIP7.39□□□□□ -1.23
CLK3-208ENST00000562626 SLC38A11Q08AI6 406 aa7.39□□□□□ -1.23
CLK3-208ENST00000562626 OR2F1Q13607 317 aa7.39□□□□□ -1.23
CLK3-208ENST00000562626 USF2Q15853 346 aaPredicted RBP7.39□□□□□ -1.23
CLK3-208ENST00000562626 FAM106AQ4KMX7 169 aa7.39□□□□□ -1.23
CLK3-208ENST00000562626 OR1S2Q8NGQ3 325 aa7.39□□□□□ -1.23
CLK3-208ENST00000562626 PRR25Q96S07 402 aa7.39□□□□□ -1.23
CLK3-208ENST00000562626 MCRIP2Q9BUT9 160 aaKnown RBP7.39□□□□□ -1.23
CLK3-208ENST00000562626 GAR1Q9NY12 217 aaKnown RBP7.39□□□□□ -1.23
CLK3-208ENST00000562626 IGHV3-66A0A0C4DH42 116 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 SMCO3A2RU48 225 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 E5RGE8 158 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 YIF1AO95070 293 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 LY86O95711 162 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 TOMM40O96008 361 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 PVALBP20472 110 aaPredicted RBP7.38□□□□□ -1.23
CLK3-208ENST00000562626 P2RY1P47900 373 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 SULT1A1P50225 295 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 YPEL3P61236 119 aaPredicted RBP7.38□□□□□ -1.23
CLK3-208ENST00000562626 CYCSP99999 105 aaKnown RBP7.38□□□□□ -1.23
CLK3-208ENST00000562626 AKR1C1Q04828 323 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 RELQ04864 619 aaPredicted RBP7.38□□□□□ -1.23
CLK3-208ENST00000562626 DEFB114Q30KQ6 69 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 CD300EQ496F6 205 aaPredicted RBP7.38□□□□□ -1.23
CLK3-208ENST00000562626 BTNL8Q6UX41 500 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 ST8SIA2Q92186 375 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 TRGV9Q99603 122 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 ELOVL1Q9BW60 279 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 AURKAIP1Q9NWT8 199 aaPredicted RBP7.38□□□□□ -1.23
CLK3-208ENST00000562626 PEMTQ9UBM1 199 aa7.38□□□□□ -1.23
CLK3-208ENST00000562626 LSM4Q9Y4Z0 139 aaKnown RBP7.38□□□□□ -1.23
CLK3-208ENST00000562626 KMT2CQ8NEZ4 4911 aaKnown RBP7.38□□□□□ -1.23
CLK3-208ENST00000562626 TRAV30A0A087WSZ9 112 aa7.37□□□□□ -1.23
CLK3-208ENST00000562626 IGHV7-4-1A0A0J9YVY3 117 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms