RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 ASCL3Q9NQ33 180 aa11.31□□□□□ -0.6
VPS9D1-202ENST00000561976 TANC2Q9HCD6 1990 aa11.31□□□□□ -0.6
VPS9D1-202ENST00000561976 TRAV17A0A0B4J275 112 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 hADV38S2A0JD32 116 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 TM4SF5O14894 197 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 C10orf55Q5SWW7 151 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 TCF24Q7RTU0 167 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 LINC00305Q7Z4B0 112 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 PDPNQ86YL7 162 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 FLYWCH2Q96CP2 140 aaKnown RBP11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 FNDC4Q9H6D8 234 aaPredicted RBP11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 DKK4Q9UBT3 224 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 TCRBV4S1A1TA0A5B7 111 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 OR2J3O76001 311 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 LEMD1Q68G75 181 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 ETFRF1Q6IPR1 90 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 KIR3DL3Q8N743 410 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 FXYD5Q96DB9 178 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 GUCD1Q96NT3 240 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 COX11Q9Y6N1 276 aa11.3□□□□□ -0.6
VPS9D1-202ENST00000561976 C2orf70A6NJV1 201 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 ORM2P19652 201 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 GATA4P43694 442 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 FOXA3P55318 350 aaPredicted RBP11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 ZNF788Q6ZQV5 615 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 LHFPL4Q7Z7J7 247 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 ARFGEF3Q5TH69 2177 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 PGPA6NDG6 321 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 SH2D7A6NKC9 451 aaPredicted RBP11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 H0YJW9 148 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 IGHV1-46P01743 117 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 SUB1P53999 127 aaKnown RBP eCLIP11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 WT1-ASQ06250 92 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 ZNF841Q6ZN19 808 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 ZNF833PQ6ZTB9 187 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 ZNF596Q8TC21 504 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 ST6GALNAC6Q969X2 333 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 TMEM70Q9BUB7 260 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 EPDR1Q9UM22 224 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 SSUH2Q9Y2M2 353 aa11.29□□□□□ -0.6
VPS9D1-202ENST00000561976 VWC2LB2RUY7 222 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 M0QZ24 198 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 TNFSF4P23510 183 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 UBE2V1Q13404 147 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 TIMM23BQ5SRD1 257 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 ATP5L2Q7Z4Y8 100 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 LOC400499M0QZD8 3231 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 IGLV3-9A0A075B6K5 115 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 CD24P25063 80 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 HBBP68871 147 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 TMEM30BQ3MIR4 351 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 SPATA12Q7Z6I5 190 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 OR1B1Q8NGR6 318 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 LINC00574Q9H8X3 128 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 OR4C46A6NHA9 309 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 CCL3L1P16619 93 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 SSX8Q7RTT4 187 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 SVIPQ8NHG7 77 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 GAL3ST2Q9H3Q3 398 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 MRPL36Q9P0J6 103 aaKnown RBP11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 LINC00312Q9Y6C7 94 aa11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 RAI1Q7Z5J4 1906 aaPredicted RBP11.28□□□□□ -0.6
VPS9D1-202ENST00000561976 IGKV1D-37A0A075B6S9 117 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 IGHV1-69-2A0A0G2JMI3 117 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 MOSP00540 346 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 ZNF474Q6S9Z5 364 aaPredicted RBP11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 SEM1Q6ZVN7 128 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 RNASE8Q8TDE3 154 aaKnown RBP11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 PGLYRP4Q96LB8 373 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 A0A1B0GXF2 115 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 IGLC7A0M8Q6 106 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 NKX6-3A6NJ46 265 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 TMEM177Q53S58 311 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 FAM162BQ5T6X4 162 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 OR4F17Q8NGA8 305 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 OR10X1Q8NGY0 326 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 PERPQ96FX8 193 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 GPR82Q96P67 336 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 RPP21Q9H633 154 aaKnown RBP11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 C7orf69Q9H7B7 122 aa11.27□□□□□ -0.61
VPS9D1-202ENST00000561976 A8MWL6 223 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 CA7P43166 264 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 MUC15Q8N387 334 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 OR4C13Q8NGP0 309 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 VSTM2AQ8TAG5 236 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 TMEM167AQ8TBQ9 72 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 URB1-AS1Q96HZ7 61 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 H3BTX0 84 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 TOMM40O96008 361 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 P01737 135 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 ZNF137PP52743 207 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 CCL8P80075 99 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 STXBP6Q8NFX7 210 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 OR5AN1Q8NGI8 311 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 DAZAP1Q96EP5 407 aaKnown RBP11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 TP73-AS1Q9UF72 201 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 NAV3Q8IVL0 2385 aa11.26□□□□□ -0.61
VPS9D1-202ENST00000561976 PLCE1Q9P212 2302 aa11.25□□□□□ -0.61
VPS9D1-202ENST00000561976 CGB1A6NKQ9 187 aa11.25□□□□□ -0.61
VPS9D1-202ENST00000561976 NBEAP1P0C6P0 100 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms