RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 Q8WTZ3 238 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 AJUBAQ96IF1 538 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 RARRES2Q99969 163 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 WNT10AQ9GZT5 417 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 PARLQ9H300 379 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 SAV1Q9H4B6 383 aaPredicted RBP5.99□□□□□ -1.45
VPS39-204ENST00000561818 VSIRQ9H7M9 311 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 SDF2L1Q9HCN8 221 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 CLEC5AQ9NY25 188 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 HIGD1AQ9Y241 93 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 CENPVL3A0A0U1RRI6 287 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 CGB1A6NKQ9 187 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 H7BYZ3 331 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 I3L2K1 104 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 BMPR1BO00238 502 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 NUPL2O15504 423 aaKnown RBP5.98□□□□□ -1.45
VPS39-204ENST00000561818 IGLC1P0CG04 106 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 RD3LP0DJH9 198 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 CEBPGP53567 150 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 RELQ04864 619 aaPredicted RBP5.98□□□□□ -1.45
VPS39-204ENST00000561818 SAMD13Q5VXD3 122 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 BPIFA4PQ86YQ2 179 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.98□□□□□ -1.45
VPS39-204ENST00000561818 NECAP1Q8NC96 275 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 OR4F17Q8NGA8 305 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 PAXXQ9BUH6 204 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 OR51M1Q9H341 326 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 TPSG1Q9NRR2 321 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 C21orf62Q9NYP8 219 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 KALRNO60229 2985 aa5.98□□□□□ -1.45
VPS39-204ENST00000561818 IGLV11-55A0A075B6I3 123 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 TRBV24-1A0A075B6N3 115 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 IGHV4-61A0A0C4DH41 118 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 MDFIC2A0A1B0GVS7 189 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 TMEM89A2RUT3 159 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 C9JQL5 133 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 NDUFS7O75251 213 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 ATF4P18848 351 aaPredicted RBP5.97□□□□□ -1.45
VPS39-204ENST00000561818 BMI1P35226 326 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 CNN1P51911 297 aaKnown RBP5.97□□□□□ -1.45
VPS39-204ENST00000561818 KLRD1Q13241 179 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 MRGPRG-AS1Q2M3A8 158 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 DEFB113Q30KQ7 82 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 C10orf55Q5SWW7 151 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 LINC00305Q7Z4B0 112 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 LHFPL4Q7Z7J7 247 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 Q8N9W7 124 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 OR5AU1Q8NGC0 362 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 EEF1AKMT3Q96AZ1 226 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 USMG5Q96IX5 58 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 FNDC4Q9H6D8 234 aaPredicted RBP5.97□□□□□ -1.45
VPS39-204ENST00000561818 C7orf69Q9H7B7 122 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 SEPSECSQ9HD40 501 aaKnown RBP5.97□□□□□ -1.45
VPS39-204ENST00000561818 ZNF355PQ9NSJ1 428 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 IGSF10Q6WRI0 2623 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 USP24Q9UPU5 2620 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 MYO18BQ8IUG5 2567 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 TNCP24821 2201 aa5.97□□□□□ -1.45
VPS39-204ENST00000561818 IGKV1OR2-108A0A075B7D4 117 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 IGHV7-81A0A0B4J1V7 117 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 TRAV40A0A0B4J280 105 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 A0A0G2JLM5 398 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 PSMB11A5LHX3 300 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 J3QKU1 62 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 K7EIM0 57 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 ZNF253O75346 499 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 SCO1O75880 301 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 IGF1P05019 195 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 S100A6P06703 90 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 HIST1H1EP10412 219 aaKnown RBP5.96□□□□□ -1.46
VPS39-204ENST00000561818 RPL7P18124 248 aaKnown RBP5.96□□□□□ -1.46
VPS39-204ENST00000561818 GNG4P50150 75 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 FAM3BP58499 235 aaPredicted RBP5.96□□□□□ -1.46
VPS39-204ENST00000561818 ADIRFQ15847 76 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 C1orf194Q5T5A4 169 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 ZNF600Q6ZNG1 722 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 C9orf139Q6ZV77 190 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 C5orf56Q8N8D9 126 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 C5orf17Q8NAS9 161 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 OR1B1Q8NGR6 318 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 OR2T6Q8NHC8 308 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 HIF1ANQ9NWT6 349 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 CDC42EP3Q9UKI2 254 aa5.96□□□□□ -1.46
VPS39-204ENST00000561818 TMA7Q9Y2S6 64 aaKnown RBP5.96□□□□□ -1.46
VPS39-204ENST00000561818 IGKV1D-37A0A075B6S9 117 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 IGHV4-30-2A0A087WSY4 118 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 TRBV9A0A0B4J1U6 114 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 TRBV6-1A0A0K0K1D8 114 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 HELTA6NFD8 242 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 PPP5D1E7EU14 171 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 E7EUB6 86 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 AP4M1O00189 453 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 OR10J4P0C629 311 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 MYOD1P15172 320 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 RAB5AP20339 215 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 CNTFRP26992 372 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 AKR1C3P42330 323 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 PSG9Q00887 426 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 ZNF674Q2M3X9 581 aa5.95□□□□□ -1.46
VPS39-204ENST00000561818 Q56UQ5 140 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms