RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 PRR13Q9NZ81 148 aa7.58□□□□□ -1.2
CLK3-205ENST00000561673 SCP2D1Q9UJQ7 156 aa7.58□□□□□ -1.2
CLK3-205ENST00000561673 KCNIP3Q9Y2W7 256 aa7.58□□□□□ -1.2
CLK3-205ENST00000561673 CEBPZOSA8MTT3 80 aa7.57□□□□□ -1.2
CLK3-205ENST00000561673 DNASE2O00115 360 aaPredicted RBP7.57□□□□□ -1.2
CLK3-205ENST00000561673 NOL3O60936 208 aaKnown RBP7.57□□□□□ -1.2
CLK3-205ENST00000561673 JTBO76095 146 aa7.57□□□□□ -1.2
CLK3-205ENST00000561673 NXPH3O95157 252 aa7.57□□□□□ -1.2
CLK3-205ENST00000561673 AKR1C4P17516 323 aa7.57□□□□□ -1.2
CLK3-205ENST00000561673 CRYBB3P26998 211 aa7.57□□□□□ -1.2
CLK3-205ENST00000561673 TIGITQ495A1 244 aa7.57□□□□□ -1.2
CLK3-205ENST00000561673 C2orf83Q53S99 150 aa7.57□□□□□ -1.2
CLK3-205ENST00000561673 NMSQ5H8A3 153 aa7.57□□□□□ -1.2
CLK3-205ENST00000561673 PRSS54Q6PEW0 395 aa7.57□□□□□ -1.2
CLK3-205ENST00000561673 FAM24BQ8N5W8 94 aa7.57□□□□□ -1.2
CLK3-205ENST00000561673 MCFD2Q8NI22 146 aa7.57□□□□□ -1.2
CLK3-205ENST00000561673 TMEM170AQ8WVE7 144 aa7.57□□□□□ -1.2
CLK3-205ENST00000561673 IL22RA2Q969J5 263 aa7.57□□□□□ -1.2
CLK3-205ENST00000561673 SCGB3A2Q96PL1 93 aa7.57□□□□□ -1.2
CLK3-205ENST00000561673 TRAV30A0A087WSZ9 112 aa7.56□□□□□ -1.2
CLK3-205ENST00000561673 RPS10-NUDT3A0A1W2PQS6 291 aa7.56□□□□□ -1.2
CLK3-205ENST00000561673 A0A1W2PS18 150 aa7.56□□□□□ -1.2
CLK3-205ENST00000561673 MPTX1A8MV57 137 aa7.56□□□□□ -1.2
CLK3-205ENST00000561673 SULT1A3P0DMM9 295 aa7.56□□□□□ -1.2
CLK3-205ENST00000561673 SULT1A4P0DMN0 295 aa7.56□□□□□ -1.2
CLK3-205ENST00000561673 SUPT4H1P63272 117 aaKnown RBP7.56□□□□□ -1.2
CLK3-205ENST00000561673 PMS2P11Q13670 270 aa7.56□□□□□ -1.2
CLK3-205ENST00000561673 LEMD1Q68G75 181 aa7.56□□□□□ -1.2
CLK3-205ENST00000561673 LYZL2Q7Z4W2 148 aa7.56□□□□□ -1.2
CLK3-205ENST00000561673 SLC24A4Q8NFF2 622 aa7.56□□□□□ -1.2
CLK3-205ENST00000561673 RNASEH2CQ8TDP1 164 aaKnown RBP7.56□□□□□ -1.2
CLK3-205ENST00000561673 METTL26Q96S19 204 aa7.56□□□□□ -1.2
CLK3-205ENST00000561673 TMEM231Q9H6L2 316 aa7.56□□□□□ -1.2
CLK3-205ENST00000561673 KMT2AQ03164 3969 aa7.56□□□□□ -1.2
CLK3-205ENST00000561673 TRAV2A0A0B4J234 112 aa7.55□□□□□ -1.2
CLK3-205ENST00000561673 A0A0B4J2A0 478 aa7.55□□□□□ -1.2
CLK3-205ENST00000561673 CXorf65A6NEN9 183 aa7.55□□□□□ -1.2
CLK3-205ENST00000561673 SCGB2A1O75556 95 aa7.55□□□□□ -1.2
CLK3-205ENST00000561673 IGLC1P0CG04 106 aa7.55□□□□□ -1.2
CLK3-205ENST00000561673 SLC25A4P12235 298 aa7.55□□□□□ -1.2
CLK3-205ENST00000561673 OR10J1P30954 320 aa7.55□□□□□ -1.2
CLK3-205ENST00000561673 CCR6P51684 374 aa7.55□□□□□ -1.2
CLK3-205ENST00000561673 RND2P52198 227 aa7.55□□□□□ -1.2
CLK3-205ENST00000561673 DEFB131AP59861 70 aa7.55□□□□□ -1.2
CLK3-205ENST00000561673 KLF9Q13886 244 aaPredicted RBP7.55□□□□□ -1.2
CLK3-205ENST00000561673 RBMS2Q15434 407 aaKnown RBP7.55□□□□□ -1.2
CLK3-205ENST00000561673 OR1S2Q8NGQ3 325 aa7.55□□□□□ -1.2
CLK3-205ENST00000561673 CACFD1Q9UGQ2 172 aa7.55□□□□□ -1.2
CLK3-205ENST00000561673 SHPKQ9UHJ6 478 aa7.55□□□□□ -1.2
CLK3-205ENST00000561673 RABAC1Q9UI14 185 aa7.55□□□□□ -1.2
CLK3-205ENST00000561673 NPY1RP25929 384 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 P2RY1P47900 373 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 YPEL3P61236 119 aaPredicted RBP7.54□□□□□ -1.2
CLK3-205ENST00000561673 SMCO1Q147U7 214 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 PYDC2Q56P42 97 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 STXBP6Q8NFX7 210 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 Q8WTZ3 238 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 GATAD1Q8WUU5 269 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 NPIPB3Q92617 1050 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 TRIM63Q969Q1 353 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 RARRES2Q99969 163 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 RBKSQ9H477 322 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 HSPB7Q9UBY9 170 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 U3KQ87 197 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 U3KQE9 123 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 VPS13DQ5THJ4 4388 aa7.54□□□□□ -1.2
CLK3-205ENST00000561673 BIRC6Q9NR09 4857 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 NUPR2A6NF83 97 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 K7EQG2 157 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 CA1P00915 261 aaPredicted RBP7.53□□□□□ -1.2
CLK3-205ENST00000561673 IFNA10P01566 189 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 ANXA3P12429 323 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 ETFRF1Q6IPR1 90 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 CEMP1Q6PRD7 247 aaPredicted RBP7.53□□□□□ -1.2
CLK3-205ENST00000561673 NOXA1Q86UR1 476 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 STHQ8IWL8 128 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 LGI3Q8N145 548 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 TOMM5Q8N4H5 51 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 TMEM217Q8N7C4 229 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 OR11H2Q8NH07 326 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 DTD1Q8TEA8 209 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 DCANP1Q8TF63 244 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 ACY3Q96HD9 319 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 NARS2Q96I59 477 aaKnown RBP7.53□□□□□ -1.2
CLK3-205ENST00000561673 V9GYH0 126 aa7.53□□□□□ -1.2
CLK3-205ENST00000561673 CCDC160A6NGH7 325 aa7.52□□□□□ -1.21
CLK3-205ENST00000561673 IL4P05112 153 aa7.52□□□□□ -1.21
CLK3-205ENST00000561673 HNRNPCP07910 306 aaKnown RBP eCLIP7.52□□□□□ -1.21
CLK3-205ENST00000561673 GIG44P09565 113 aaPredicted RBP7.52□□□□□ -1.21
CLK3-205ENST00000561673 ZNF688P0C7X2 276 aa7.52□□□□□ -1.21
CLK3-205ENST00000561673 RD3LP0DJH9 198 aa7.52□□□□□ -1.21
CLK3-205ENST00000561673 FAUP35544 74 aaKnown RBP7.52□□□□□ -1.21
CLK3-205ENST00000561673 AP3S2P59780 193 aa7.52□□□□□ -1.21
CLK3-205ENST00000561673 SRPXP78539 464 aa7.52□□□□□ -1.21
CLK3-205ENST00000561673 USF2Q15853 346 aaPredicted RBP7.52□□□□□ -1.21
CLK3-205ENST00000561673 ZNF79Q15937 498 aa7.52□□□□□ -1.21
CLK3-205ENST00000561673 TMEM128Q5BJH2 165 aa7.52□□□□□ -1.21
CLK3-205ENST00000561673 C16orf54Q6UWD8 224 aa7.52□□□□□ -1.21
CLK3-205ENST00000561673 TMED4Q7Z7H5 227 aa7.52□□□□□ -1.21
CLK3-205ENST00000561673 GLMPQ8WWB7 406 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms