RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 STHQ8IWL8 128 aa10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 HIST3H2BBQ8N257 126 aa10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 LYZL4Q96KX0 146 aa10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 A0A0G2JMM0 328 aa10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 A0A1W2PPB8 328 aa10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 EPOPA6NHQ4 379 aa10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 KIR3DP1A8MWS1 328 aa10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 RAMP3O60896 148 aa10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 CRPP02741 224 aa10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 GAGE13Q4V321 117 aa10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 MRPL52Q86TS9 123 aaKnown RBP10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 LHFPL1Q86WI0 220 aa10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 SPAG8Q99932 426 aaPredicted RBP10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 ERG28Q9UKR5 140 aa10.97□□□□□ -0.65
CSPG4P11-201ENST00000560634 TDRD6O60522 2096 aaKnown RBP10.96□□□□□ -0.65
CSPG4P11-201ENST00000560634 TRAV2A0A0B4J234 112 aa10.96□□□□□ -0.65
CSPG4P11-201ENST00000560634 LYPD3O95274 346 aa10.96□□□□□ -0.65
CSPG4P11-201ENST00000560634 SDK2Q58EX2 2172 aa10.96□□□□□ -0.65
CSPG4P11-201ENST00000560634 CACNA1GO43497 2377 aa10.96□□□□□ -0.65
CSPG4P11-201ENST00000560634 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.96□□□□□ -0.65
CSPG4P11-201ENST00000560634 CD28P10747 220 aa10.96□□□□□ -0.65
CSPG4P11-201ENST00000560634 IGHV4-39P01824 125 aa10.96□□□□□ -0.66
CSPG4P11-201ENST00000560634 COL11A2P13942 1736 aaPredicted RBP10.96□□□□□ -0.66
CSPG4P11-201ENST00000560634 Q5PR19 223 aa10.96□□□□□ -0.66
CSPG4P11-201ENST00000560634 COLCA1Q6ZS62 124 aa10.96□□□□□ -0.66
CSPG4P11-201ENST00000560634 TRAV8-4A0A0B4J246 113 aa10.96□□□□□ -0.66
CSPG4P11-201ENST00000560634 COLCA2A8K830 154 aa10.96□□□□□ -0.66
CSPG4P11-201ENST00000560634 TMEM238C9JI98 176 aa10.96□□□□□ -0.66
CSPG4P11-201ENST00000560634 TREML4Q6UXN2 200 aa10.96□□□□□ -0.66
CSPG4P11-201ENST00000560634 ABHD17AQ96GS6 310 aa10.96□□□□□ -0.66
CSPG4P11-201ENST00000560634 WFDC1Q9HC57 220 aa10.96□□□□□ -0.66
CSPG4P11-201ENST00000560634 DEPPQ9NTK1 212 aa10.96□□□□□ -0.66
CSPG4P11-201ENST00000560634 RPUSD1Q9UJJ7 312 aaKnown RBP10.96□□□□□ -0.66
CSPG4P11-201ENST00000560634 SAMD5Q5TGI4 173 aa10.95□□□□□ -0.66
CSPG4P11-201ENST00000560634 CMC4P56277 68 aaPredicted RBP10.95□□□□□ -0.66
CSPG4P11-201ENST00000560634 DTX2Q86UW9 622 aa10.95□□□□□ -0.66
CSPG4P11-201ENST00000560634 GGTLC1Q9BX51 225 aa10.95□□□□□ -0.66
CSPG4P11-201ENST00000560634 ANKRD31Q8N7Z5 1873 aa10.95□□□□□ -0.66
CSPG4P11-201ENST00000560634 BRWD3Q6RI45 1802 aa10.95□□□□□ -0.66
CSPG4P11-201ENST00000560634 TRAV12-3A0A0B4J271 114 aa10.95□□□□□ -0.66
CSPG4P11-201ENST00000560634 GZMBP10144 247 aa10.95□□□□□ -0.66
CSPG4P11-201ENST00000560634 LY96Q9Y6Y9 160 aa10.95□□□□□ -0.66
CSPG4P11-201ENST00000560634 PIKFYVEQ9Y2I7 2098 aa10.95□□□□□ -0.66
CSPG4P11-201ENST00000560634 AMBPP02760 352 aa10.95□□□□□ -0.66
CSPG4P11-201ENST00000560634 GFI1BQ5VTD9 330 aa10.95□□□□□ -0.66
CSPG4P11-201ENST00000560634 POLEQ07864 2286 aa10.94□□□□□ -0.66
CSPG4P11-201ENST00000560634 ADAMTSL1Q8N6G6 1762 aa10.94□□□□□ -0.66
CSPG4P11-201ENST00000560634 CRYGSP22914 178 aa10.94□□□□□ -0.66
CSPG4P11-201ENST00000560634 SFTA2Q6UW10 78 aa10.94□□□□□ -0.66
CSPG4P11-201ENST00000560634 RNF5Q99942 180 aa10.94□□□□□ -0.66
CSPG4P11-201ENST00000560634 HTN3P15516 51 aa10.94□□□□□ -0.66
CSPG4P11-201ENST00000560634 TRGV4A0A0C4DH28 118 aa10.94□□□□□ -0.66
CSPG4P11-201ENST00000560634 PAX8Q06710 450 aa10.94□□□□□ -0.66
CSPG4P11-201ENST00000560634 LAGE3Q14657 143 aa10.94□□□□□ -0.66
CSPG4P11-201ENST00000560634 ZNF319Q9P2F9 582 aa10.94□□□□□ -0.66
CSPG4P11-201ENST00000560634 M0R2P5 195 aa10.94□□□□□ -0.66
CSPG4P11-201ENST00000560634 C1orf194Q5T5A4 169 aa10.94□□□□□ -0.66
CSPG4P11-201ENST00000560634 PHLDA1Q8WV24 401 aaPredicted RBP10.94□□□□□ -0.66
CSPG4P11-201ENST00000560634 TDRD15B5MCY1 1934 aaKnown RBP10.93□□□□□ -0.66
CSPG4P11-201ENST00000560634 PRR32B1ATL7 298 aa10.93□□□□□ -0.66
CSPG4P11-201ENST00000560634 SRRM5B3KS81 715 aa10.93□□□□□ -0.66
CSPG4P11-201ENST00000560634 CKS1BP61024 79 aa10.93□□□□□ -0.66
CSPG4P11-201ENST00000560634 GAGE2BQ13066 116 aa10.93□□□□□ -0.66
CSPG4P11-201ENST00000560634 GAGE2EQ4V326 116 aa10.93□□□□□ -0.66
CSPG4P11-201ENST00000560634 PLEKHB2Q96CS7 222 aa10.93□□□□□ -0.66
CSPG4P11-201ENST00000560634 GAGE2DQ9UEU5 116 aa10.93□□□□□ -0.66
CSPG4P11-201ENST00000560634 IGKV1D-8A0A087WSZ0 117 aa10.93□□□□□ -0.66
CSPG4P11-201ENST00000560634 DLEU1O43261 78 aa10.93□□□□□ -0.66
CSPG4P11-201ENST00000560634 GLMPQ8WWB7 406 aa10.93□□□□□ -0.66
CSPG4P11-201ENST00000560634 TAF1LQ8IZX4 1826 aa10.93□□□□□ -0.66
CSPG4P11-201ENST00000560634 OOSP1A8MZH6 123 aa10.93□□□□□ -0.66
CSPG4P11-201ENST00000560634 TIMM23O14925 209 aa10.93□□□□□ -0.66
CSPG4P11-201ENST00000560634 A0A0A6YYD4 124 aa10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 IGKV3D-20A0A0C4DH25 116 aa10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 VDAC2P45880 294 aaPredicted RBP10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 LINC01551Q86U37 167 aa10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 RGPD4Q7Z3J3 1758 aa10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 SMAD7O15105 426 aaKnown RBP10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 CD300EQ496F6 205 aaPredicted RBP10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 ARHGEF17Q96PE2 2063 aaPredicted RBP10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 PTPRFP10586 1907 aa10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 ADARB2-AS1A8MUL3 147 aa10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 WNT2P09544 360 aa10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 SPANXA1Q9NS26 97 aa10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 SPTBN2O15020 2390 aa10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 NPIPB5A8MRT5 1133 aa10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 PPIFP30405 207 aaKnown RBP10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 FOXF2Q12947 444 aa10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 GFI1Q99684 422 aa10.92□□□□□ -0.66
CSPG4P11-201ENST00000560634 CHCHD5Q9BSY4 110 aa10.91□□□□□ -0.66
CSPG4P11-201ENST00000560634 CYTL1Q9NRR1 136 aa10.91□□□□□ -0.66
CSPG4P11-201ENST00000560634 A0A1B0GWJ7 208 aa10.91□□□□□ -0.66
CSPG4P11-201ENST00000560634 THBDP07204 575 aa10.91□□□□□ -0.66
CSPG4P11-201ENST00000560634 CXCL1P09341 107 aa10.91□□□□□ -0.66
CSPG4P11-201ENST00000560634 TMEM14EPQ6UXP3 125 aa10.91□□□□□ -0.66
CSPG4P11-201ENST00000560634 VWCEQ96DN2 955 aa10.91□□□□□ -0.66
CSPG4P11-201ENST00000560634 AGMATQ9BSE5 352 aa10.91□□□□□ -0.66
CSPG4P11-201ENST00000560634 VSIRQ9H7M9 311 aa10.91□□□□□ -0.66
CSPG4P11-201ENST00000560634 IGKV1-12A0A0C4DH73 117 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms