RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 WT1-ASQ06250 92 aa10.85□□□□□ -0.67
LDLR-213ENST00000560502 PJVKQ0ZLH3 352 aa10.85□□□□□ -0.67
LDLR-213ENST00000560502 FHL3Q13643 280 aa10.85□□□□□ -0.67
LDLR-213ENST00000560502 FAM74A1Q5RGS3 127 aa10.85□□□□□ -0.67
LDLR-213ENST00000560502 C9orf66Q5T8R8 295 aa10.85□□□□□ -0.67
LDLR-213ENST00000560502 LCNL1Q6ZST4 164 aa10.85□□□□□ -0.67
LDLR-213ENST00000560502 TMEM170AQ8WVE7 144 aa10.85□□□□□ -0.67
LDLR-213ENST00000560502 PARP11Q9NR21 331 aa10.85□□□□□ -0.67
LDLR-213ENST00000560502 PFDN2Q9UHV9 154 aa10.85□□□□□ -0.67
LDLR-213ENST00000560502 RYR2Q92736 4967 aa10.85□□□□□ -0.67
LDLR-213ENST00000560502 ZNF705EA8MWA4 302 aaPredicted RBP10.84□□□□□ -0.67
LDLR-213ENST00000560502 CYB5BO43169 146 aa10.84□□□□□ -0.67
LDLR-213ENST00000560502 MBP02144 154 aa10.84□□□□□ -0.67
LDLR-213ENST00000560502 ELANEP08246 267 aa10.84□□□□□ -0.67
LDLR-213ENST00000560502 OR13C7P0DN81 318 aa10.84□□□□□ -0.67
LDLR-213ENST00000560502 RAB31Q13636 194 aa10.84□□□□□ -0.67
LDLR-213ENST00000560502 C10orf55Q5SWW7 151 aa10.84□□□□□ -0.67
LDLR-213ENST00000560502 AKR1C8PQ5T2L2 129 aa10.84□□□□□ -0.67
LDLR-213ENST00000560502 ETFRF1Q6IPR1 90 aa10.84□□□□□ -0.67
LDLR-213ENST00000560502 ZNF709Q8N972 641 aa10.84□□□□□ -0.67
LDLR-213ENST00000560502 OR10W1Q8NGF6 305 aa10.84□□□□□ -0.67
LDLR-213ENST00000560502 OR1P1Q8NH06 330 aa10.84□□□□□ -0.67
LDLR-213ENST00000560502 NPVFQ9HCQ7 196 aa10.84□□□□□ -0.67
LDLR-213ENST00000560502 ZNF580Q9UK33 172 aa10.84□□□□□ -0.67
LDLR-213ENST00000560502 FBXO7Q9Y3I1 522 aa10.84□□□□□ -0.67
LDLR-213ENST00000560502 A0A1B0GW64 132 aa10.83□□□□□ -0.68
LDLR-213ENST00000560502 NCBP2LA6PVI3 153 aaKnown RBP10.83□□□□□ -0.68
LDLR-213ENST00000560502 TEX22C9J3V5 150 aa10.83□□□□□ -0.68
LDLR-213ENST00000560502 C3orf84H3BNL1 204 aa10.83□□□□□ -0.68
LDLR-213ENST00000560502 ATP6V1G1O75348 118 aa10.83□□□□□ -0.68
LDLR-213ENST00000560502 CNIH1O95406 144 aa10.83□□□□□ -0.68
LDLR-213ENST00000560502 IGHG4P01861 327 aa10.83□□□□□ -0.68
LDLR-213ENST00000560502 FGF7P21781 194 aa10.83□□□□□ -0.68
LDLR-213ENST00000560502 GNB1P62873 340 aa10.83□□□□□ -0.68
LDLR-213ENST00000560502 SSBP2P81877 361 aaPredicted RBP10.83□□□□□ -0.68
LDLR-213ENST00000560502 FXYD3Q14802 87 aa10.83□□□□□ -0.68
LDLR-213ENST00000560502 MYOZ3Q8TDC0 251 aa10.83□□□□□ -0.68
LDLR-213ENST00000560502 C4orf3Q8WVX3 66 aa10.83□□□□□ -0.68
LDLR-213ENST00000560502 ARPC1AQ92747 370 aa10.83□□□□□ -0.68
LDLR-213ENST00000560502 RASL11BQ9BPW5 248 aa10.83□□□□□ -0.68
LDLR-213ENST00000560502 SH3BGRL3Q9H299 93 aa10.83□□□□□ -0.68
LDLR-213ENST00000560502 SEC14L6B5MCN3 397 aa10.82□□□□□ -0.68
LDLR-213ENST00000560502 E7EUB6 86 aa10.82□□□□□ -0.68
LDLR-213ENST00000560502 S100A1P23297 94 aa10.82□□□□□ -0.68
LDLR-213ENST00000560502 PSMB8P28062 276 aa10.82□□□□□ -0.68
LDLR-213ENST00000560502 BTNL8Q6UX41 500 aa10.82□□□□□ -0.68
LDLR-213ENST00000560502 IL34Q6ZMJ4 242 aa10.82□□□□□ -0.68
LDLR-213ENST00000560502 TMEM144Q7Z5S9 345 aa10.82□□□□□ -0.68
LDLR-213ENST00000560502 SLC35E1Q96K37 410 aa10.82□□□□□ -0.68
LDLR-213ENST00000560502 TMEM68Q96MH6 324 aa10.82□□□□□ -0.68
LDLR-213ENST00000560502 ASCL2Q99929 193 aa10.82□□□□□ -0.68
LDLR-213ENST00000560502 HSPB9Q9BQS6 159 aa10.82□□□□□ -0.68
LDLR-213ENST00000560502 NPCDR1Q9BY65 106 aa10.82□□□□□ -0.68
LDLR-213ENST00000560502 F11RQ9Y624 299 aaKnown RBP10.82□□□□□ -0.68
LDLR-213ENST00000560502 DNAH7Q8WXX0 4024 aa10.82□□□□□ -0.68
LDLR-213ENST00000560502 NPIPB5A8MRT5 1133 aa10.81□□□□□ -0.68
LDLR-213ENST00000560502 TEX46H3BTG2 121 aa10.81□□□□□ -0.68
LDLR-213ENST00000560502 PRH1P02810 166 aa10.81□□□□□ -0.68
LDLR-213ENST00000560502 IGF1P05019 195 aa10.81□□□□□ -0.68
LDLR-213ENST00000560502 OPRK1P41145 380 aa10.81□□□□□ -0.68
LDLR-213ENST00000560502 CAMLGP49069 296 aa10.81□□□□□ -0.68
LDLR-213ENST00000560502 RUNX1Q01196 453 aa10.81□□□□□ -0.68
LDLR-213ENST00000560502 TEPPQ6URK8 271 aa10.81□□□□□ -0.68
LDLR-213ENST00000560502 TMEM182Q6ZP80 229 aaPredicted RBP10.81□□□□□ -0.68
LDLR-213ENST00000560502 SLC16A13Q7RTY0 426 aa10.81□□□□□ -0.68
LDLR-213ENST00000560502 COMMD7Q86VX2 200 aa10.81□□□□□ -0.68
LDLR-213ENST00000560502 EIF4E3Q8N5X7 224 aaKnown RBP10.81□□□□□ -0.68
LDLR-213ENST00000560502 LFNGQ8NES3 379 aa10.81□□□□□ -0.68
LDLR-213ENST00000560502 LYPD6BQ8NI32 183 aa10.81□□□□□ -0.68
LDLR-213ENST00000560502 RBMXL1Q96E39 390 aaKnown RBP10.81□□□□□ -0.68
LDLR-213ENST00000560502 ZNF256Q9Y2P7 627 aaPredicted RBP10.81□□□□□ -0.68
LDLR-213ENST00000560502 TENM2Q9NT68 2774 aa10.81□□□□□ -0.68
LDLR-213ENST00000560502 SACSQ9NZJ4 4579 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 SMCO3A2RU48 225 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 FCN1O00602 326 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 HBE1P02100 147 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 CRYGCP07315 174 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 CTRB1P17538 263 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 RAB2AP61019 212 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 CX3CL1P78423 397 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 AKR1C1Q04828 323 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 TMEM41BQ5BJD5 291 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 PXDC1Q5TGL8 231 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 ASPHD1Q5U4P2 390 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 CTRB2Q6GPI1 263 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 Q6ZRG5 221 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 ABHD5Q8WTS1 349 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 RSG1Q9BU20 258 aa10.8□□□□□ -0.68
LDLR-213ENST00000560502 IGHV7-81A0A0B4J1V7 117 aa10.79□□□□□ -0.68
LDLR-213ENST00000560502 RAB19A4D1S5 217 aa10.79□□□□□ -0.68
LDLR-213ENST00000560502 AREGP15514 252 aa10.79□□□□□ -0.68
LDLR-213ENST00000560502 CRIP2P52943 208 aaPredicted RBP10.79□□□□□ -0.68
LDLR-213ENST00000560502 KIAA0141Q14154 515 aaPredicted RBP10.79□□□□□ -0.68
LDLR-213ENST00000560502 UQCC3Q6UW78 93 aa10.79□□□□□ -0.68
LDLR-213ENST00000560502 SLC7A5P1Q8MH63 180 aa10.79□□□□□ -0.68
LDLR-213ENST00000560502 CXorf58Q96LI9 332 aa10.79□□□□□ -0.68
LDLR-213ENST00000560502 TRAV1-1A0A0B4J248 108 aa10.78□□□□□ -0.68
LDLR-213ENST00000560502 HIST1H1BP16401 226 aaKnown RBP10.78□□□□□ -0.68
LDLR-213ENST00000560502 PPIFP30405 207 aaKnown RBP10.78□□□□□ -0.68
LDLR-213ENST00000560502 RPL29P47914 159 aaKnown RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms