RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 HOXA5P20719 270 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 SUB1P53999 127 aaKnown RBP eCLIP8.49□□□□□ -1.05
CUX1-217ENST00000558836 LEMD1Q68G75 181 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 C11orf71Q6IPW1 123 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 UNQ6494/PRO21346Q6UXR6 183 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 OR5AU1Q8NGC0 362 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 OR2T10Q8NGZ9 312 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 SGMS2Q8NHU3 365 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 CACNG8Q8WXS5 425 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 TIMD4Q96H15 378 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 SFRP2Q96HF1 295 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 ZNF355PQ9NSJ1 428 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 CHTOPQ9Y3Y2 248 aaKnown RBP8.49□□□□□ -1.05
CUX1-217ENST00000558836 FNDC10F2Z333 226 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 PHOX2AO14813 284 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 COX7A2P2O60397 106 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 SMIM6P0DI80 62 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 GPX4P36969 197 aaPredicted RBP8.49□□□□□ -1.05
CUX1-217ENST00000558836 HES1Q14469 280 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 MMDQ15546 238 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 MMD2Q8IY49 270 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 OR1B1Q8NGR6 318 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 ANAPC16Q96DE5 110 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 SGK494Q96LW2 274 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 SSBP3Q9BWW4 388 aaPredicted RBP8.49□□□□□ -1.05
CUX1-217ENST00000558836 SLC25A2Q9BXI2 301 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 DMRT1Q9Y5R6 373 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 FAM208BQ5VWN6 2430 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 LOC105371242A0A075B767 164 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 CNIH1O95406 144 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 C8orf88P0DMB2 117 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 ZFP36P26651 326 aaKnown RBP8.49□□□□□ -1.05
CUX1-217ENST00000558836 UBE2L3P68036 154 aaKnown RBP8.49□□□□□ -1.05
CUX1-217ENST00000558836 KLF17Q5JT82 389 aaPredicted RBP8.49□□□□□ -1.05
CUX1-217ENST00000558836 CDPF1Q6NVV7 123 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 FAM167A-AS1Q96KT0 104 aa8.49□□□□□ -1.05
CUX1-217ENST00000558836 CUBNO60494 3623 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 POLQO75417 2590 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 ZNF320A2RRD8 509 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 PSMB11A5LHX3 300 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 SPINK4O60575 86 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 CRYGBP07316 175 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 COMPP49747 757 aaPredicted RBP8.48□□□□□ -1.05
CUX1-217ENST00000558836 PQLC2Q6ZP29 291 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 TEX45Q8NA69 505 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 BEND2Q8NDZ0 799 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 RNASEH2CQ8TDP1 164 aaKnown RBP8.48□□□□□ -1.05
CUX1-217ENST00000558836 TNFRSF14Q92956 283 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 TNFRSF19Q9NS68 423 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 MDFIC2A0A1B0GVS7 189 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 TCRBV4S1A1TA0A5B7 111 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 HELTA6NFD8 242 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 FRMD6-AS1P0C7T7 363 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 HTR1DP28221 377 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 CDX1P47902 265 aaPredicted RBP8.48□□□□□ -1.05
CUX1-217ENST00000558836 LCN2P80188 198 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 C10orf113Q5VZT2 155 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 LINC00305Q7Z4B0 112 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 OR10D4PQ8NGN7 298 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 BLNKQ8WV28 456 aa8.48□□□□□ -1.05
CUX1-217ENST00000558836 SRSF12Q8WXF0 261 aaKnown RBP8.48□□□□□ -1.05
CUX1-217ENST00000558836 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.47□□□□□ -1.053e-7■■■■■ 26.8
CUX1-217ENST00000558836 LY6LH3BQJ8 138 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 PPP1R2P9O14990 202 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 FABP4P15090 132 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 ATP5IP56385 69 aaPredicted RBP8.47□□□□□ -1.05
CUX1-217ENST00000558836 CENPWQ5EE01 88 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 TEX38Q6PEX7 206 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 DYNAPQ8N1N2 210 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 LY6G5BQ8NDX9 201 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 RNASE7Q9H1E1 156 aaKnown RBP8.47□□□□□ -1.05
CUX1-217ENST00000558836 SRD5A3Q9H8P0 318 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 TEX22C9J3V5 150 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 S100A8P05109 93 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 TAS2R45P59539 299 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 FXYD3Q14802 87 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 PYGO2Q9BRQ0 406 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 OR51M1Q9H341 326 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 PRORYQ9H606 182 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 LPAR2Q9HBW0 351 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 TMEM167BQ9NRX6 74 aa8.47□□□□□ -1.05
CUX1-217ENST00000558836 TRAV34A0A0B4J273 112 aa8.46□□□□□ -1.05
CUX1-217ENST00000558836 INS-IGF2F8WCM5 200 aa8.46□□□□□ -1.05
CUX1-217ENST00000558836 ERVFC1-1P60608 527 aa8.46□□□□□ -1.05
CUX1-217ENST00000558836 RANP62826 216 aaKnown RBP8.46□□□□□ -1.05
CUX1-217ENST00000558836 SLC35B1P78383 322 aa8.46□□□□□ -1.05
CUX1-217ENST00000558836 TPTE2P1Q5T6R2 138 aa8.46□□□□□ -1.05
CUX1-217ENST00000558836 OR10G8Q8NGN5 311 aa8.46□□□□□ -1.05
CUX1-217ENST00000558836 C8orf46Q8TAG6 207 aa8.46□□□□□ -1.05
CUX1-217ENST00000558836 CHODLQ9H9P2 273 aa8.46□□□□□ -1.05
CUX1-217ENST00000558836 DPM3Q9P2X0 92 aa8.46□□□□□ -1.05
CUX1-217ENST00000558836 A0A1B0GUS0 222 aa8.46□□□□□ -1.06
CUX1-217ENST00000558836 GPR6P46095 362 aaPredicted RBP8.46□□□□□ -1.06
CUX1-217ENST00000558836 GNG4P50150 75 aa8.46□□□□□ -1.06
CUX1-217ENST00000558836 C9orf152Q5JTZ5 239 aa8.46□□□□□ -1.06
CUX1-217ENST00000558836 KIR3DL3Q8N743 410 aa8.46□□□□□ -1.06
CUX1-217ENST00000558836 EAF1Q96JC9 268 aaPredicted RBP8.46□□□□□ -1.06
CUX1-217ENST00000558836 PAXXQ9BUH6 204 aa8.46□□□□□ -1.06
CUX1-217ENST00000558836 GAR1Q9NY12 217 aaKnown RBP8.46□□□□□ -1.06
CUX1-217ENST00000558836 RPH3ALQ9UNE2 315 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms