RNA–Protein interactions for RNA: ENST00000557657.5

TMEM260-216, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-216ENST00000557657 DEFA6Q01524 100 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 KIAA1644Q3SXP7 199 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 PRR31Q5SQ13 230 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 LINC00305Q7Z4B0 112 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 OR4A5Q8NH83 315 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 TMEM18Q96B42 140 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 C14orf144Q96I85 54 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 IGF2BP2-AS1Q96M15 143 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 SERTAD4Q9NUC0 356 aa16.99■□□□□ 0.31
TMEM260-216ENST00000557657 SNURFLB1AK76 121 aa16.98■□□□□ 0.31
TMEM260-216ENST00000557657 FCN1O00602 326 aa16.98■□□□□ 0.31
TMEM260-216ENST00000557657 PNKDQ8N490 385 aa16.98■□□□□ 0.31
TMEM260-216ENST00000557657 C8orf31Q8N9H6 132 aa16.98■□□□□ 0.31
TMEM260-216ENST00000557657 OR1B1Q8NGR6 318 aa16.98■□□□□ 0.31
TMEM260-216ENST00000557657 BLNKQ8WV28 456 aa16.98■□□□□ 0.31
TMEM260-216ENST00000557657 PAXXQ9BUH6 204 aa16.98■□□□□ 0.31
TMEM260-216ENST00000557657 IGLV1-47P01700 117 aa16.98■□□□□ 0.31
TMEM260-216ENST00000557657 TIGITQ495A1 244 aa16.98■□□□□ 0.31
TMEM260-216ENST00000557657 OR5R1Q8NH85 324 aa16.98■□□□□ 0.31
TMEM260-216ENST00000557657 FBXL15Q9H469 300 aa16.98■□□□□ 0.31
TMEM260-216ENST00000557657 INSIG2Q9Y5U4 225 aa16.98■□□□□ 0.31
TMEM260-216ENST00000557657 IGHV1-3A0A0C4DH29 117 aa16.97■□□□□ 0.31
TMEM260-216ENST00000557657 A0A1W2PRE2 83 aa16.97■□□□□ 0.31
TMEM260-216ENST00000557657 INS-IGF2F8WCM5 200 aa16.97■□□□□ 0.31
TMEM260-216ENST00000557657 RANP62826 216 aaKnown RBP16.97■□□□□ 0.31
TMEM260-216ENST00000557657 FAM71F2Q6NXP2 309 aa16.97■□□□□ 0.31
TMEM260-216ENST00000557657 AKAP6Q13023 2319 aa16.97■□□□□ 0.31
TMEM260-216ENST00000557657 CD24P25063 80 aa16.97■□□□□ 0.31
TMEM260-216ENST00000557657 DDTP30046 118 aa16.97■□□□□ 0.31
TMEM260-216ENST00000557657 MC5RP33032 325 aa16.97■□□□□ 0.31
TMEM260-216ENST00000557657 PKIAP61925 76 aa16.97■□□□□ 0.31
TMEM260-216ENST00000557657 TNFRSF19Q9NS68 423 aa16.97■□□□□ 0.31
TMEM260-216ENST00000557657 SUB1P53999 127 aaKnown RBP eCLIP16.96■□□□□ 0.31
TMEM260-216ENST00000557657 MRPL54Q6P161 138 aaKnown RBP16.96■□□□□ 0.31
TMEM260-216ENST00000557657 BTF3L4Q96K17 158 aa16.96■□□□□ 0.31
TMEM260-216ENST00000557657 C19orf24Q9BVV8 132 aa16.96■□□□□ 0.31
TMEM260-216ENST00000557657 RPH3ALQ9UNE2 315 aa16.96■□□□□ 0.31
TMEM260-216ENST00000557657 RAXQ9Y2V3 346 aa16.96■□□□□ 0.31
TMEM260-216ENST00000557657 LY96Q9Y6Y9 160 aa16.96■□□□□ 0.31
TMEM260-216ENST00000557657 PPIAL4CA0A0B4J2A2 164 aa16.96■□□□□ 0.31
TMEM260-216ENST00000557657 BUB1B-PAK6H3BSN5 160 aa16.96■□□□□ 0.31
TMEM260-216ENST00000557657 CCL21O00585 134 aa16.96■□□□□ 0.31
TMEM260-216ENST00000557657 PPIAL4GP0DN37 164 aa16.96■□□□□ 0.31
TMEM260-216ENST00000557657 RPL27AP46776 148 aaKnown RBP16.96■□□□□ 0.31
TMEM260-216ENST00000557657 FXYD5Q96DB9 178 aa16.96■□□□□ 0.31
TMEM260-216ENST00000557657 MRPL32Q9BYC8 188 aaKnown RBP16.96■□□□□ 0.31
TMEM260-216ENST00000557657 SIGLEC9Q9Y336 463 aa16.96■□□□□ 0.31
TMEM260-216ENST00000557657 ZFHX3Q15911 3703 aa16.96■□□□□ 0.3
TMEM260-216ENST00000557657 AMMECR1Q9Y4X0 333 aaPredicted RBP16.95■□□□□ 0.3
TMEM260-216ENST00000557657 ARL2-SNX15V9GYD0 113 aa16.95■□□□□ 0.3
TMEM260-216ENST00000557657 A0A1W2PRD5 423 aa16.95■□□□□ 0.3
TMEM260-216ENST00000557657 A0A1W2PRF3 423 aa16.95■□□□□ 0.3
TMEM260-216ENST00000557657 A0A1W2PRM7 423 aa16.95■□□□□ 0.3
TMEM260-216ENST00000557657 GCGP01275 180 aa16.95■□□□□ 0.3
TMEM260-216ENST00000557657 LGALS7P47929 136 aa16.95■□□□□ 0.3
TMEM260-216ENST00000557657 SSX2Q16385 188 aa16.95■□□□□ 0.3
TMEM260-216ENST00000557657 ZNF672Q499Z4 452 aaPredicted RBP16.95■□□□□ 0.3
TMEM260-216ENST00000557657 IBA57Q5T440 356 aaKnown RBP16.95■□□□□ 0.3
TMEM260-216ENST00000557657 ZNF329Q86UD4 541 aa16.95■□□□□ 0.3
TMEM260-216ENST00000557657 THAP8Q8NA92 274 aa16.95■□□□□ 0.3
TMEM260-216ENST00000557657 ONECUT1Q9UBC0 465 aa16.95■□□□□ 0.3
TMEM260-216ENST00000557657 ISLRO14498 428 aa16.94■□□□□ 0.3
TMEM260-216ENST00000557657 SERF1AO75920 110 aa16.94■□□□□ 0.3
TMEM260-216ENST00000557657 FBLN7Q53RD9 439 aa16.94■□□□□ 0.3
TMEM260-216ENST00000557657 PRR27Q6MZM9 219 aa16.94■□□□□ 0.3
TMEM260-216ENST00000557657 TSTD3H0UI37 97 aa16.94■□□□□ 0.3
TMEM260-216ENST00000557657 CRYGBP07316 175 aa16.94■□□□□ 0.3
TMEM260-216ENST00000557657 WNK2Q9Y3S1 2297 aa16.94■□□□□ 0.3
TMEM260-216ENST00000557657 SCGB1D1O95968 90 aa16.93■□□□□ 0.3
TMEM260-216ENST00000557657 CRISP2P16562 243 aa16.93■□□□□ 0.3
TMEM260-216ENST00000557657 RAB4BP61018 213 aa16.93■□□□□ 0.3
TMEM260-216ENST00000557657 CLEC7AQ9BXN2 247 aa16.93■□□□□ 0.3
TMEM260-216ENST00000557657 CMTM2Q8TAZ6 248 aa16.93■□□□□ 0.3
TMEM260-216ENST00000557657 CHODLQ9H9P2 273 aa16.93■□□□□ 0.3
TMEM260-216ENST00000557657 VPS13CQ709C8 3753 aa16.92■□□□□ 0.3
TMEM260-216ENST00000557657 COMPP49747 757 aaPredicted RBP16.92■□□□□ 0.3
TMEM260-216ENST00000557657 NAT8BQ9UHF3 227 aa16.92■□□□□ 0.3
TMEM260-216ENST00000557657 TEX22C9J3V5 150 aa16.92■□□□□ 0.3
TMEM260-216ENST00000557657 ARF6P62330 175 aa16.92■□□□□ 0.3
TMEM260-216ENST00000557657 PPP1R27Q86WC6 154 aa16.92■□□□□ 0.3
TMEM260-216ENST00000557657 TEX45Q8NA69 505 aa16.92■□□□□ 0.3
TMEM260-216ENST00000557657 OR1L4Q8NGR5 311 aa16.92■□□□□ 0.3
TMEM260-216ENST00000557657 RPEQ96AT9 228 aa16.92■□□□□ 0.3
TMEM260-216ENST00000557657 PRRX1P54821 245 aa16.91■□□□□ 0.3
TMEM260-216ENST00000557657 BPIFB3P59826 476 aa16.91■□□□□ 0.3
TMEM260-216ENST00000557657 KLRD1Q13241 179 aa16.91■□□□□ 0.3
TMEM260-216ENST00000557657 DNLZQ5SXM8 178 aa16.91■□□□□ 0.3
TMEM260-216ENST00000557657 MS4A10Q96PG2 267 aa16.91■□□□□ 0.3
TMEM260-216ENST00000557657 OSTCQ9NRP0 149 aa16.91■□□□□ 0.3
TMEM260-216ENST00000557657 HILPDAQ9Y5L2 63 aa16.91■□□□□ 0.3
TMEM260-216ENST00000557657 CORTO00230 105 aa16.91■□□□□ 0.3
TMEM260-216ENST00000557657 PEX7O00628 323 aa16.91■□□□□ 0.3
TMEM260-216ENST00000557657 CRYGCP07315 174 aa16.91■□□□□ 0.3
TMEM260-216ENST00000557657 CA7P43166 264 aa16.91■□□□□ 0.3
TMEM260-216ENST00000557657 SELENOTP62341 195 aa16.91■□□□□ 0.3
TMEM260-216ENST00000557657 CX3CL1P78423 397 aa16.91■□□□□ 0.3
TMEM260-216ENST00000557657 SSX8Q7RTT4 187 aa16.91■□□□□ 0.3
TMEM260-216ENST00000557657 FAM103A1Q9BTL3 118 aaKnown RBP16.91■□□□□ 0.3
TMEM260-216ENST00000557657 BAGE2Q86Y30 109 aa16.9■□□□□ 0.3
TMEM260-216ENST00000557657 ADORA2A-AS1P86434 159 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms