RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 PRRC2AP48634 2157 aaKnown RBP4.72□□□□□ -1.65
SYNE2-225ENST00000557060 FLNAP21333 2647 aaKnown RBP4.72□□□□□ -1.65
SYNE2-225ENST00000557060 IGHV4-30-2A0A087WSY4 118 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 TRAV34A0A0B4J273 112 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 TRAV40A0A0B4J280 105 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 MT-ND4LP03901 98 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 HOXB4P17483 251 aaPredicted RBP4.72□□□□□ -1.65
SYNE2-225ENST00000557060 RPL23P62829 140 aaKnown RBP4.72□□□□□ -1.65
SYNE2-225ENST00000557060 SLC35B1P78383 322 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 CX3CL1P78423 397 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 PRR20EP86478 221 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 PRR20CP86479 221 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 PRR20DP86480 221 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 PRR20BP86481 221 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 PRR20AP86496 221 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 OR5I1Q13606 314 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 LY6EQ16553 131 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 PRR31Q5SQ13 230 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 C10orf113Q5VZT2 155 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 SP5Q6BEB4 398 aaPredicted RBP4.72□□□□□ -1.65
SYNE2-225ENST00000557060 TEX45Q8NA69 505 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 MS4A10Q96PG2 267 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 ASCL2Q99929 193 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 SMDT1Q9H4I9 107 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 DMRT1Q9Y5R6 373 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 TRBV20OR9-2A0A075B6H5 130 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 H7BYZ3 331 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 LY86O95711 162 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 TRGC2P03986 189 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 MGST1P10620 155 aaKnown RBP4.72□□□□□ -1.65
SYNE2-225ENST00000557060 LMO4P61968 165 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 NDPQ00604 133 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 HABP2Q14520 560 aaPredicted RBP4.72□□□□□ -1.65
SYNE2-225ENST00000557060 ELOBQ15370 118 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 HIST2H2BCQ6DN03 193 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 C15orf54Q8N8G6 183 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 DNAJC4Q9NNZ3 241 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 KCNIP2Q9NS61 270 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 NAT8Q9UHE5 227 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 FUT9Q9Y231 359 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 SELENOKQ9Y6D0 94 aa4.72□□□□□ -1.65
SYNE2-225ENST00000557060 IGHV3OR16-13A0A075B7E8 117 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 IGHV3-74A0A0B4J1X5 117 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 LINC01548A6NM66 108 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 LY6LH3BQJ8 138 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 SLC17A3O00476 420 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 RAB5BP61020 215 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 GNG5P63218 68 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 PRR27Q6MZM9 219 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 CLEC2AQ6UVW9 174 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 C8orf46Q8TAG6 207 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 NANPQ8TBE9 248 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 RBM14Q96PK6 669 aaKnown RBP4.71□□□□□ -1.66
SYNE2-225ENST00000557060 NOTCH3Q9UM47 2321 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 IGHV2-70DA0A0C4DH43 119 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 SEC14L6B5MCN3 397 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 TEX22C9J3V5 150 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 CLDN34H7C241 214 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 OR2J3O76001 311 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 TIGITQ495A1 244 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 FAM71F2Q6NXP2 309 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 C8orf31Q8N9H6 132 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 OR11H6Q8NGC7 330 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 OR4A5Q8NH83 315 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 ZNF503Q96F45 646 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 TBX15Q96SF7 602 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 TECRQ9NZ01 308 aaKnown RBP4.71□□□□□ -1.66
SYNE2-225ENST00000557060 WNK1Q9H4A3 2382 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 ITPR3Q14573 2671 aa4.71□□□□□ -1.66
SYNE2-225ENST00000557060 IGKV1D-37A0A075B6S9 117 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 TCRBV4S1A1TA0A5B7 111 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 GGTLC3B5MD39 225 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 G3V318 75 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 M0R1W7 72 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 EREGO14944 169 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 PSG1P11464 419 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 PDLIM4P50479 330 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 TCL1AP56279 114 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 NDUFA6P56556 154 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 SSTP61278 116 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 C5orf64Q2M2E5 130 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 Q56UQ5 140 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 PATE2Q6UY27 113 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 PQLC2Q6ZP29 291 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 BCL6BQ8N143 479 aaPredicted RBP4.7□□□□□ -1.66
SYNE2-225ENST00000557060 OR2T10Q8NGZ9 312 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 CACNG8Q8WXS5 425 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 CFHR4Q92496 578 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 FAM210BQ96KR6 192 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 RASL11BQ9BPW5 248 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 C7orf69Q9H7B7 122 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 SERTAD4Q9NUC0 356 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 F11RQ9Y624 299 aaKnown RBP4.7□□□□□ -1.66
SYNE2-225ENST00000557060 NBPF19A0A087WUL8 3843 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 IGHV3-49A0A0A0MS15 119 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 TMEM8BA6NDV4 472 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 OR2T8A6NH00 312 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 F6UZH7 168 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 TMEM250H0YL14 139 aa4.7□□□□□ -1.66
SYNE2-225ENST00000557060 C8orf88P0DMB2 117 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms