RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 NIPSNAP3BQ9BS92 247 aa6.44□□□□□ -1.38
SYNE2-209ENST00000553308 HLA-DRB4X5D2U9 266 aa6.44□□□□□ -1.38
SYNE2-209ENST00000553308 HSPG2P98160 4391 aa6.44□□□□□ -1.38
SYNE2-209ENST00000553308 A0A0G2JRQ6 117 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 SMIM9A6NGZ8 99 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 IGLC1P0CG04 106 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 PI3P19957 117 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 PRSS3P35030 304 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 RPL5P46777 297 aaKnown RBP6.43□□□□□ -1.38
SYNE2-209ENST00000553308 RND2P52198 227 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 AP2S1P53680 142 aaPredicted RBP6.43□□□□□ -1.38
SYNE2-209ENST00000553308 UCP3P55916 312 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 DHODHQ02127 395 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 BSXQ3C1V8 233 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 SAMD12Q8N8I0 201 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 TP53RKQ96S44 253 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 PDCD10Q9BUL8 212 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 VCX3BQ9H321 246 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 NRN1Q9NPD7 142 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 RFNGQ9Y644 331 aa6.43□□□□□ -1.38
SYNE2-209ENST00000553308 TRAV30A0A087WSZ9 112 aa6.42□□□□□ -1.38
SYNE2-209ENST00000553308 TEX48A0A1B0GUV7 120 aa6.42□□□□□ -1.38
SYNE2-209ENST00000553308 IL4P05112 153 aa6.42□□□□□ -1.38
SYNE2-209ENST00000553308 OR10J1P30954 320 aa6.42□□□□□ -1.38
SYNE2-209ENST00000553308 PRSS54Q6PEW0 395 aa6.42□□□□□ -1.38
SYNE2-209ENST00000553308 SIGLEC15Q6ZMC9 328 aa6.42□□□□□ -1.38
SYNE2-209ENST00000553308 Q8N1X5 172 aa6.42□□□□□ -1.38
SYNE2-209ENST00000553308 ZNF709Q8N972 641 aa6.42□□□□□ -1.38
SYNE2-209ENST00000553308 OR1S2Q8NGQ3 325 aa6.42□□□□□ -1.38
SYNE2-209ENST00000553308 GPX8Q8TED1 209 aa6.42□□□□□ -1.38
SYNE2-209ENST00000553308 Q8WTZ3 238 aa6.42□□□□□ -1.38
SYNE2-209ENST00000553308 SEPSECSQ9HD40 501 aaKnown RBP6.42□□□□□ -1.38
SYNE2-209ENST00000553308 ENY2Q9NPA8 101 aa6.42□□□□□ -1.38
SYNE2-209ENST00000553308 RAB26Q9ULW5 256 aa6.42□□□□□ -1.38
SYNE2-209ENST00000553308 YTHDF2Q9Y5A9 579 aaKnown RBP6.42□□□□□ -1.38
SYNE2-209ENST00000553308 LOC102723971A0A1B0GUV8 181 aa6.41□□□□□ -1.38
SYNE2-209ENST00000553308 RPS10-NUDT3A0A1W2PQS6 291 aa6.41□□□□□ -1.38
SYNE2-209ENST00000553308 M0QYG6 137 aa6.41□□□□□ -1.38
SYNE2-209ENST00000553308 BUB3O43684 328 aa6.41□□□□□ -1.38
SYNE2-209ENST00000553308 TMEM127O75204 238 aa6.41□□□□□ -1.38
SYNE2-209ENST00000553308 PGAM2P15259 253 aa6.41□□□□□ -1.38
SYNE2-209ENST00000553308 NKX2-1P43699 371 aaPredicted RBP6.41□□□□□ -1.38
SYNE2-209ENST00000553308 PIGPP57054 158 aa6.41□□□□□ -1.38
SYNE2-209ENST00000553308 YPEL3P61236 119 aaPredicted RBP6.41□□□□□ -1.38
SYNE2-209ENST00000553308 RND3P61587 244 aa6.41□□□□□ -1.38
SYNE2-209ENST00000553308 OXA1LQ15070 435 aa6.41□□□□□ -1.38
SYNE2-209ENST00000553308 GSG1LQ6UXU4 331 aa6.41□□□□□ -1.38
SYNE2-209ENST00000553308 C6orf223Q8N319 242 aa6.41□□□□□ -1.38
SYNE2-209ENST00000553308 YTHDF1Q9BYJ9 559 aaKnown RBP6.41□□□□□ -1.38
SYNE2-209ENST00000553308 SLC35B3Q9H1N7 401 aa6.41□□□□□ -1.38
SYNE2-209ENST00000553308 SAV1Q9H4B6 383 aaPredicted RBP6.41□□□□□ -1.38
SYNE2-209ENST00000553308 TMED3Q9Y3Q3 217 aa6.41□□□□□ -1.38
SYNE2-209ENST00000553308 NBDYA0A0U1RRE5 68 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 NXPH3O95157 252 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 HBE1P02100 147 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 RCVRNP35243 200 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 FAM3BP58499 235 aaPredicted RBP6.4□□□□□ -1.38
SYNE2-209ENST00000553308 DAD1P61803 113 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 NEDD8Q15843 81 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 TRIM16LQ309B1 348 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 SP6Q3SY56 376 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 SNX29P2Q8IUI4 249 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 C1orf158Q8N1D5 194 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 OR4B1Q8NGF8 309 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 ZNRF2Q8NHG8 242 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 LINC00052Q96N35 136 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 ATG101Q9BSB4 218 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 WDR12Q9GZL7 423 aaKnown RBP6.4□□□□□ -1.38
SYNE2-209ENST00000553308 SCRT2Q9NQ03 307 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 GOLT1BQ9Y3E0 138 aa6.4□□□□□ -1.38
SYNE2-209ENST00000553308 C3orf85A0A1B0GTC6 90 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 F6UB75 175 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 GSTZ1O43708 216 aaPredicted RBP6.39□□□□□ -1.39
SYNE2-209ENST00000553308 ATG12O94817 140 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 TOMM40O96008 361 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 SLC25A4P12235 298 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 RPS19P39019 145 aaKnown RBP6.39□□□□□ -1.39
SYNE2-209ENST00000553308 HTR2BP41595 481 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 RORCP51449 518 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 SPCS3P61009 180 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 ZNF79Q15937 498 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 RRN3P1Q2M238 152 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 C2orf83Q53S99 150 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 RNASE12Q5GAN4 147 aaKnown RBP6.39□□□□□ -1.39
SYNE2-209ENST00000553308 FOXI2Q6ZQN5 318 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 LHFPL1Q86WI0 220 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 CROCCP3Q8IVE0 287 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 C15orf53Q8NAA6 179 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 SLC24A4Q8NFF2 622 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 OR51G1Q8NGK1 321 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 RNASE11Q8TAA1 199 aaKnown RBP6.39□□□□□ -1.39
SYNE2-209ENST00000553308 TMEM170AQ8WVE7 144 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 NPIPB3Q92617 1050 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 RRNAD1Q96FB5 475 aaKnown RBP6.39□□□□□ -1.39
SYNE2-209ENST00000553308 ZNF486Q96H40 463 aaPredicted RBP6.39□□□□□ -1.39
SYNE2-209ENST00000553308 ACY3Q96HD9 319 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 C7orf50Q9BRJ6 194 aaKnown RBP6.39□□□□□ -1.39
SYNE2-209ENST00000553308 SCPEP1Q9HB40 452 aa6.39□□□□□ -1.39
SYNE2-209ENST00000553308 SOCS3O14543 225 aa6.38□□□□□ -1.39
SYNE2-209ENST00000553308 PRM2P04554 102 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms