RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 LRRTM1Q86UE6 522 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 SLC25A42Q86VD7 318 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 OR4D10Q8NGI6 311 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 FCAMRQ8WWV6 532 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 ZNF414Q96IQ9 312 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 Q96MT0 163 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 ATP6V0BQ99437 205 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 PHB2Q99623 299 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 NICN1Q9BSH3 213 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 ZNF436Q9C0F3 470 aaPredicted RBP2.54□□□□□ -2
LIMA1-206ENST00000550611 CCDC90BQ9GZT6 254 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 LPAR5Q9H1C0 372 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 ZNF430Q9H8G1 570 aaPredicted RBP2.54□□□□□ -2
LIMA1-206ENST00000550611 Q9H8V8 135 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 SLC2A9Q9NRM0 540 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 PLCXD1Q9NUJ7 323 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 RDH8Q9NYR8 311 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 CKLFQ9UBR5 152 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 UBQLN2Q9UHD9 624 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 CLEC2DQ9UHP7 191 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 AK3Q9UIJ7 227 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 MGAT4AQ9UM21 535 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 DIMT1Q9UNQ2 313 aaKnown RBP2.54□□□□□ -2
LIMA1-206ENST00000550611 ZNF257Q9Y2Q1 563 aa2.54□□□□□ -2
LIMA1-206ENST00000550611 RPL36Q9Y3U8 105 aaKnown RBP2.54□□□□□ -2
LIMA1-206ENST00000550611 FAT4Q6V0I7 4981 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 IGLV11-55A0A075B6I3 123 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 IGHV4-4A0A075B6R2 117 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 TRBV6-7A0A0A0MS04 114 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 TRBV7-1A0A0A6YYK4 115 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 MFSD2BA6NFX1 497 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 MPTX1A8MV57 137 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 PRSS46E5RG02 174 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 E5RGE8 158 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 K7EMT4 169 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 EI24O14681 340 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 DEFB4AO15263 64 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 DIRAS3O95661 229 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 GIG44P09565 113 aaPredicted RBP2.53□□□□□ -2
LIMA1-206ENST00000550611 CD3GP09693 182 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 OR4E1P0C645 316 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 SAA1P0DJI8 122 aaPredicted RBP2.53□□□□□ -2
LIMA1-206ENST00000550611 AREGP15514 252 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 HIST1H1BP16401 226 aaKnown RBP2.53□□□□□ -2
LIMA1-206ENST00000550611 SRMP19623 302 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 G0S2P27469 103 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 RCVRNP35243 200 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 TALDO1P37837 337 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 NPBWR1P48145 328 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 SERPINB10P48595 397 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 LINC01547P58512 204 aaPredicted RBP2.53□□□□□ -2
LIMA1-206ENST00000550611 MED21Q13503 144 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 EIF4EBP1Q13541 118 aaPredicted RBP2.53□□□□□ -2
LIMA1-206ENST00000550611 TPBGQ13641 420 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 RTL8BQ17RB0 113 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 TRIM16LQ309B1 348 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 ETFRF1Q6IPR1 90 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 TMPRSS11AQ6ZMR5 421 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 SMIM15Q7Z3B0 74 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 TRPT1Q86TN4 253 aaKnown RBP2.53□□□□□ -2
LIMA1-206ENST00000550611 APRG1Q8IVJ8 170 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 SPAG16Q8N0X2 631 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 PUSL1Q8N0Z8 303 aaKnown RBP2.53□□□□□ -2
LIMA1-206ENST00000550611 POM121L12Q8N7R1 296 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 ZFP41Q8N8Y5 198 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 Q8NAQ8 132 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 CCDC197Q8NCU1 140 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 OR4A4PQ8NGN8 299 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 OR11H2Q8NH07 326 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 TMEM167AQ8TBQ9 72 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 ZNF502Q8TBZ5 544 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 LRRC20Q8TCA0 184 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 ACOT12Q8WYK0 555 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 MAFIPQ8WZ33 124 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 EEF1AKMT3Q96AZ1 226 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 ADTRPQ96IZ2 230 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 C12orf57Q99622 126 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 CABLES2Q9BTV7 478 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 RNF126Q9BV68 326 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 TMEM59Q9BXS4 323 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 OR2D2Q9H210 308 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 OR51E2Q9H255 320 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 PLEKHJ1Q9NW61 149 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 NSG2Q9Y328 171 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 UFC1Q9Y3C8 167 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 ETV7Q9Y603 341 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 S4R3C0 116 aa2.53□□□□□ -2
LIMA1-206ENST00000550611 FSIP2Q5CZC0 6907 aa2.53□□□□□ -2.01
LIMA1-206ENST00000550611 FAT3Q8TDW7 4589 aa2.52□□□□□ -2.01
LIMA1-206ENST00000550611 A0A075B6Q4 140 aa2.52□□□□□ -2.01
LIMA1-206ENST00000550611 TRAV10A0A0B4J240 114 aa2.52□□□□□ -2.01
LIMA1-206ENST00000550611 LOC100130705A0A1B0GUX0 176 aa2.52□□□□□ -2.01
LIMA1-206ENST00000550611 SMIM30A4D0T7 59 aa2.52□□□□□ -2.01
LIMA1-206ENST00000550611 OR4C46A6NHA9 309 aa2.52□□□□□ -2.01
LIMA1-206ENST00000550611 ZNF705EA8MWA4 302 aaPredicted RBP2.52□□□□□ -2.01
LIMA1-206ENST00000550611 SMIM1B2RUZ4 78 aa2.52□□□□□ -2.01
LIMA1-206ENST00000550611 NUPL2O15504 423 aaKnown RBP2.52□□□□□ -2.01
LIMA1-206ENST00000550611 FABP7O15540 132 aa2.52□□□□□ -2.01
LIMA1-206ENST00000550611 CD74P04233 296 aa2.52□□□□□ -2.01
LIMA1-206ENST00000550611 CDK1P06493 297 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms