RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 ZFAND3Q9H8U3 227 aa9.38□□□□□ -0.91
PTCH1-218ENST00000548945 TRAV6A0A075B6T7 132 aa9.37□□□□□ -0.91
PTCH1-218ENST00000548945 A0A1W2PS18 150 aa9.37□□□□□ -0.91
PTCH1-218ENST00000548945 CORTO00230 105 aa9.37□□□□□ -0.91
PTCH1-218ENST00000548945 IGHV3-48P01763 117 aa9.37□□□□□ -0.91
PTCH1-218ENST00000548945 H2AFB2P0C5Z0 115 aa9.37□□□□□ -0.91
PTCH1-218ENST00000548945 SNCAP37840 140 aa9.37□□□□□ -0.91
PTCH1-218ENST00000548945 DEFB131AP59861 70 aa9.37□□□□□ -0.91
PTCH1-218ENST00000548945 PVRIGQ6DKI7 326 aa9.37□□□□□ -0.91
PTCH1-218ENST00000548945 STHQ8IWL8 128 aa9.37□□□□□ -0.91
PTCH1-218ENST00000548945 LILRB2Q8N423 598 aa9.37□□□□□ -0.91
PTCH1-218ENST00000548945 Q8NAQ8 132 aa9.37□□□□□ -0.91
PTCH1-218ENST00000548945 PUS1Q9Y606 427 aaKnown RBP eCLIP9.37□□□□□ -0.91
PTCH1-218ENST00000548945 PCLOQ9Y6V0 5065 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 hCG_2014768A0A024R1R8 64 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 TMEM50AO95807 157 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 APOHP02749 345 aaPredicted RBP9.36□□□□□ -0.91
PTCH1-218ENST00000548945 SUB1P53999 127 aaKnown RBP eCLIP9.36□□□□□ -0.91
PTCH1-218ENST00000548945 RND3P61587 244 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 PRR20EP86478 221 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 PRR20CP86479 221 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 PRR20DP86480 221 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 PRR20BP86481 221 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 PRR20AP86496 221 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 LEMD1Q68G75 181 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 LHFPL1Q86WI0 220 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 OR13C8Q8NGS7 320 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 TERB2Q8NHR7 220 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 ZNF486Q96H40 463 aaPredicted RBP9.36□□□□□ -0.91
PTCH1-218ENST00000548945 GRAMD2BQ96HH9 432 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 SCGB3A2Q96PL1 93 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 APLNQ9ULZ1 77 aa9.36□□□□□ -0.91
PTCH1-218ENST00000548945 DEFB4AO15263 64 aa9.35□□□□□ -0.91
PTCH1-218ENST00000548945 PRAF2O60831 178 aa9.35□□□□□ -0.91
PTCH1-218ENST00000548945 SCGB2A1O75556 95 aa9.35□□□□□ -0.91
PTCH1-218ENST00000548945 ATG12O94817 140 aa9.35□□□□□ -0.91
PTCH1-218ENST00000548945 P0C879 139 aa9.35□□□□□ -0.91
PTCH1-218ENST00000548945 SPP1P10451 314 aa9.35□□□□□ -0.91
PTCH1-218ENST00000548945 MIFP14174 115 aa9.35□□□□□ -0.91
PTCH1-218ENST00000548945 NPPCP23582 126 aa9.35□□□□□ -0.91
PTCH1-218ENST00000548945 RPL11P62913 178 aaKnown RBP9.35□□□□□ -0.91
PTCH1-218ENST00000548945 SURF2Q15527 256 aaPredicted RBP9.35□□□□□ -0.91
PTCH1-218ENST00000548945 MORN3Q6PF18 240 aaPredicted RBP9.35□□□□□ -0.91
PTCH1-218ENST00000548945 TRPT1Q86TN4 253 aaKnown RBP9.35□□□□□ -0.91
PTCH1-218ENST00000548945 SLC35G3Q8N808 338 aa9.35□□□□□ -0.91
PTCH1-218ENST00000548945 KIAA1109Q2LD37 5005 aa9.34□□□□□ -0.91
PTCH1-218ENST00000548945 A0A0B4J293 547 aa9.34□□□□□ -0.91
PTCH1-218ENST00000548945 A0A1B0GU03 582 aa9.34□□□□□ -0.91
PTCH1-218ENST00000548945 ZNF705EA8MWA4 302 aaPredicted RBP9.34□□□□□ -0.91
PTCH1-218ENST00000548945 IGLL5B9A064 214 aa9.34□□□□□ -0.91
PTCH1-218ENST00000548945 K7EQG2 157 aa9.34□□□□□ -0.91
PTCH1-218ENST00000548945 CLN5O75503 358 aa9.34□□□□□ -0.91
PTCH1-218ENST00000548945 IGKV1-5P01602 117 aa9.34□□□□□ -0.91
PTCH1-218ENST00000548945 GIG44P09565 113 aaPredicted RBP9.34□□□□□ -0.91
PTCH1-218ENST00000548945 CRYBB3P26998 211 aa9.34□□□□□ -0.91
PTCH1-218ENST00000548945 BCAP31P51572 246 aa9.34□□□□□ -0.91
PTCH1-218ENST00000548945 FAM24BQ8N5W8 94 aa9.34□□□□□ -0.91
PTCH1-218ENST00000548945 METTL26Q96S19 204 aa9.34□□□□□ -0.91
PTCH1-218ENST00000548945 RABAC1Q9UI14 185 aa9.34□□□□□ -0.91
PTCH1-218ENST00000548945 FLVCR2Q9UPI3 526 aa9.34□□□□□ -0.91
PTCH1-218ENST00000548945 PKHD1P08F94 4074 aa9.34□□□□□ -0.91
PTCH1-218ENST00000548945 IGHV4-28A0A0C4DH34 117 aa9.33□□□□□ -0.92
PTCH1-218ENST00000548945 IGHV3-66A0A0C4DH42 116 aa9.33□□□□□ -0.92
PTCH1-218ENST00000548945 C7orf66A4D0T2 115 aa9.33□□□□□ -0.92
PTCH1-218ENST00000548945 IFNA17P01571 189 aa9.33□□□□□ -0.92
PTCH1-218ENST00000548945 IL5P05113 134 aa9.33□□□□□ -0.92
PTCH1-218ENST00000548945 RNASE2P10153 161 aaKnown RBP9.33□□□□□ -0.92
PTCH1-218ENST00000548945 SPINK9Q5DT21 86 aa9.33□□□□□ -0.92
PTCH1-218ENST00000548945 OR4X1Q8NH49 305 aa9.33□□□□□ -0.92
PTCH1-218ENST00000548945 MARCH1Q8TCQ1 289 aa9.33□□□□□ -0.92
PTCH1-218ENST00000548945 NARS2Q96I59 477 aaKnown RBP9.33□□□□□ -0.92
PTCH1-218ENST00000548945 PDCD10Q9BUL8 212 aa9.33□□□□□ -0.92
PTCH1-218ENST00000548945 ALG5Q9Y673 324 aa9.33□□□□□ -0.92
PTCH1-218ENST00000548945 TRAV10A0A0B4J240 114 aa9.32□□□□□ -0.92
PTCH1-218ENST00000548945 B3GALNT1O75752 331 aa9.32□□□□□ -0.92
PTCH1-218ENST00000548945 RBMY1A1P0DJD3 496 aaKnown RBP9.32□□□□□ -0.92
PTCH1-218ENST00000548945 RBMY1CP0DJD4 496 aa9.32□□□□□ -0.92
PTCH1-218ENST00000548945 PGAM2P15259 253 aa9.32□□□□□ -0.92
PTCH1-218ENST00000548945 ANXA7P20073 488 aaKnown RBP9.32□□□□□ -0.92
PTCH1-218ENST00000548945 P2RY1P47900 373 aa9.32□□□□□ -0.92
PTCH1-218ENST00000548945 AKR1C2P52895 323 aa9.32□□□□□ -0.92
PTCH1-218ENST00000548945 UBE2MP61081 183 aaKnown RBP9.32□□□□□ -0.92
PTCH1-218ENST00000548945 RBMY1FQ15415 496 aaKnown RBP9.32□□□□□ -0.92
PTCH1-218ENST00000548945 IZUMO4Q1ZYL8 232 aa9.32□□□□□ -0.92
PTCH1-218ENST00000548945 BSXQ3C1V8 233 aa9.32□□□□□ -0.92
PTCH1-218ENST00000548945 TMED4Q7Z7H5 227 aa9.32□□□□□ -0.92
PTCH1-218ENST00000548945 STXBP6Q8NFX7 210 aa9.32□□□□□ -0.92
PTCH1-218ENST00000548945 ZFAND1Q8TCF1 268 aa9.32□□□□□ -0.92
PTCH1-218ENST00000548945 DCANP1Q8TF63 244 aa9.32□□□□□ -0.92
PTCH1-218ENST00000548945 TP53RKQ96S44 253 aa9.32□□□□□ -0.92
PTCH1-218ENST00000548945 FNDC4Q9H6D8 234 aaPredicted RBP9.32□□□□□ -0.92
PTCH1-218ENST00000548945 GPN1Q9HCN4 374 aaPredicted RBP9.32□□□□□ -0.92
PTCH1-218ENST00000548945 GPR132Q9UNW8 380 aa9.32□□□□□ -0.92
PTCH1-218ENST00000548945 C14orf166Q9Y224 244 aaKnown RBP9.32□□□□□ -0.92
PTCH1-218ENST00000548945 TRAV30A0A087WSZ9 112 aa9.31□□□□□ -0.92
PTCH1-218ENST00000548945 C3orf85A0A1B0GTC6 90 aa9.31□□□□□ -0.92
PTCH1-218ENST00000548945 SNRPGP15A8MWD9 76 aa9.31□□□□□ -0.92
PTCH1-218ENST00000548945 IGKV1-17P01599 117 aa9.31□□□□□ -0.92
PTCH1-218ENST00000548945 HLA-DMBP28068 263 aa9.31□□□□□ -0.92
PTCH1-218ENST00000548945 OPRK1P41145 380 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms