RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 U3KQE9 123 aa12.04□□□□□ -0.48
VPS29-204ENST00000548259 LOC100506127A0A0U1RQW1 187 aa12.03□□□□□ -0.48
VPS29-204ENST00000548259 IGKV1-39P01597 117 aa12.03□□□□□ -0.48
VPS29-204ENST00000548259 IGKV1-17P01599 117 aa12.03□□□□□ -0.48
VPS29-204ENST00000548259 HBE1P02100 147 aa12.03□□□□□ -0.48
VPS29-204ENST00000548259 IGKV1D-39P04432 117 aa12.03□□□□□ -0.48
VPS29-204ENST00000548259 CLEC2LP0C7M8 214 aa12.03□□□□□ -0.48
VPS29-204ENST00000548259 HLA-DMAP28067 261 aa12.03□□□□□ -0.48
VPS29-204ENST00000548259 NUP62P37198 522 aaPredicted RBP12.03□□□□□ -0.48
VPS29-204ENST00000548259 UCP3P55916 312 aa12.03□□□□□ -0.48
VPS29-204ENST00000548259 GSG1LQ6UXU4 331 aa12.03□□□□□ -0.48
VPS29-204ENST00000548259 NRG4Q8WWG1 115 aa12.03□□□□□ -0.48
VPS29-204ENST00000548259 HSPG2P98160 4391 aa12.03□□□□□ -0.48
VPS29-204ENST00000548259 SLC25A4P12235 298 aa12.02□□□□□ -0.49
VPS29-204ENST00000548259 YPEL3P61236 119 aaPredicted RBP12.02□□□□□ -0.49
VPS29-204ENST00000548259 DAD1P61803 113 aa12.02□□□□□ -0.49
VPS29-204ENST00000548259 TNP2Q05952 138 aa12.02□□□□□ -0.49
VPS29-204ENST00000548259 UBE2NLQ5JXB2 153 aa12.02□□□□□ -0.49
VPS29-204ENST00000548259 TMEM88Q6PEY1 159 aa12.02□□□□□ -0.49
VPS29-204ENST00000548259 SIGLEC15Q6ZMC9 328 aa12.02□□□□□ -0.49
VPS29-204ENST00000548259 C6orf223Q8N319 242 aa12.02□□□□□ -0.49
VPS29-204ENST00000548259 C7orf50Q9BRJ6 194 aaKnown RBP12.02□□□□□ -0.49
VPS29-204ENST00000548259 FNDC4Q9H6D8 234 aaPredicted RBP12.02□□□□□ -0.49
VPS29-204ENST00000548259 IGKV3-20P01619 116 aa12.01□□□□□ -0.49
VPS29-204ENST00000548259 OR10J1P30954 320 aa12.01□□□□□ -0.49
VPS29-204ENST00000548259 ID1P41134 155 aa12.01□□□□□ -0.49
VPS29-204ENST00000548259 ETV6P41212 452 aa12.01□□□□□ -0.49
VPS29-204ENST00000548259 IZUMO4Q1ZYL8 232 aa12.01□□□□□ -0.49
VPS29-204ENST00000548259 SPATA31B1PQ5VZV4 182 aa12.01□□□□□ -0.49
VPS29-204ENST00000548259 SPARTQ8N0X7 666 aa12.01□□□□□ -0.49
VPS29-204ENST00000548259 RNASE11Q8TAA1 199 aaKnown RBP12.01□□□□□ -0.49
VPS29-204ENST00000548259 RRNAD1Q96FB5 475 aaKnown RBP12.01□□□□□ -0.49
VPS29-204ENST00000548259 SCRT2Q9NQ03 307 aa12.01□□□□□ -0.49
VPS29-204ENST00000548259 A0A0B4J293 547 aa12□□□□□ -0.49
VPS29-204ENST00000548259 IL4P05112 153 aa12□□□□□ -0.49
VPS29-204ENST00000548259 HTR2BP41595 481 aa12□□□□□ -0.49
VPS29-204ENST00000548259 DHODHQ02127 395 aa12□□□□□ -0.49
VPS29-204ENST00000548259 RRN3P1Q2M238 152 aa12□□□□□ -0.49
VPS29-204ENST00000548259 IZUMO2Q6UXV1 221 aa12□□□□□ -0.49
VPS29-204ENST00000548259 CLUHP3Q96NS8 147 aa12□□□□□ -0.49
VPS29-204ENST00000548259 YTHDF1Q9BYJ9 559 aaKnown RBP12□□□□□ -0.49
VPS29-204ENST00000548259 MRPL36Q9P0J6 103 aaKnown RBP12□□□□□ -0.49
VPS29-204ENST00000548259 NBDYA0A0U1RRE5 68 aa11.99□□□□□ -0.49
VPS29-204ENST00000548259 LOC102723971A0A1B0GUV8 181 aa11.99□□□□□ -0.49
VPS29-204ENST00000548259 IGLC1P0CG04 106 aa11.99□□□□□ -0.49
VPS29-204ENST00000548259 PGAM2P15259 253 aa11.99□□□□□ -0.49
VPS29-204ENST00000548259 MLANAQ16655 118 aa11.99□□□□□ -0.49
VPS29-204ENST00000548259 TRIM16LQ309B1 348 aa11.99□□□□□ -0.49
VPS29-204ENST00000548259 ETFRF1Q6IPR1 90 aa11.99□□□□□ -0.49
VPS29-204ENST00000548259 FOXI2Q6ZQN5 318 aa11.99□□□□□ -0.49
VPS29-204ENST00000548259 LYSMD2Q8IV50 215 aa11.99□□□□□ -0.49
VPS29-204ENST00000548259 OR4B1Q8NGF8 309 aa11.99□□□□□ -0.49
VPS29-204ENST00000548259 COQ8AQ8NI60 647 aa11.99□□□□□ -0.49
VPS29-204ENST00000548259 ZNF486Q96H40 463 aaPredicted RBP11.99□□□□□ -0.49
VPS29-204ENST00000548259 SCPEP1Q9HB40 452 aa11.99□□□□□ -0.49
VPS29-204ENST00000548259 YTHDF2Q9Y5A9 579 aaKnown RBP11.99□□□□□ -0.49
VPS29-204ENST00000548259 BUB3O43684 328 aa11.98□□□□□ -0.49
VPS29-204ENST00000548259 IGKV1-5P01602 117 aa11.98□□□□□ -0.49
VPS29-204ENST00000548259 RD3LP0DJH9 198 aa11.98□□□□□ -0.49
VPS29-204ENST00000548259 RCVRNP35243 200 aa11.98□□□□□ -0.49
VPS29-204ENST00000548259 ALDH3B2P48448 385 aa11.98□□□□□ -0.49
VPS29-204ENST00000548259 RND2P52198 227 aa11.98□□□□□ -0.49
VPS29-204ENST00000548259 FXYD7P58549 80 aa11.98□□□□□ -0.49
VPS29-204ENST00000548259 RND3P61587 244 aa11.98□□□□□ -0.49
VPS29-204ENST00000548259 EBLN2Q6P2I7 272 aa11.98□□□□□ -0.49
VPS29-204ENST00000548259 SAMD12Q8N8I0 201 aa11.98□□□□□ -0.49
VPS29-204ENST00000548259 RNASEH2CQ8TDP1 164 aaKnown RBP11.98□□□□□ -0.49
VPS29-204ENST00000548259 LINC00052Q96N35 136 aa11.98□□□□□ -0.49
VPS29-204ENST00000548259 SAV1Q9H4B6 383 aaPredicted RBP11.98□□□□□ -0.49
VPS29-204ENST00000548259 SMIM31A0A1B0GVY4 71 aa11.97□□□□□ -0.49
VPS29-204ENST00000548259 CCL18P55774 89 aa11.97□□□□□ -0.49
VPS29-204ENST00000548259 SPCS3P61009 180 aa11.97□□□□□ -0.49
VPS29-204ENST00000548259 USF2Q15853 346 aaPredicted RBP11.97□□□□□ -0.49
VPS29-204ENST00000548259 BSXQ3C1V8 233 aa11.97□□□□□ -0.49
VPS29-204ENST00000548259 PRSS54Q6PEW0 395 aa11.97□□□□□ -0.49
VPS29-204ENST00000548259 NOXA1Q86UR1 476 aa11.97□□□□□ -0.49
VPS29-204ENST00000548259 TMEM208Q9BTX3 173 aa11.97□□□□□ -0.49
VPS29-204ENST00000548259 MAGT1Q9H0U3 335 aa11.97□□□□□ -0.49
VPS29-204ENST00000548259 HEYLQ9NQ87 328 aaPredicted RBP11.97□□□□□ -0.49
VPS29-204ENST00000548259 RAB26Q9ULW5 256 aa11.97□□□□□ -0.49
VPS29-204ENST00000548259 P0C879 139 aa11.96□□□□□ -0.49
VPS29-204ENST00000548259 PSMB3P49720 205 aa11.96□□□□□ -0.49
VPS29-204ENST00000548259 PIGPP57054 158 aa11.96□□□□□ -0.49
VPS29-204ENST00000548259 PSG9Q00887 426 aa11.96□□□□□ -0.49
VPS29-204ENST00000548259 SAMD13Q5VXD3 122 aa11.96□□□□□ -0.49
VPS29-204ENST00000548259 C3orf85A0A1B0GTC6 90 aa11.95□□□□□ -0.5
VPS29-204ENST00000548259 B3GALNT1O75752 331 aa11.95□□□□□ -0.5
VPS29-204ENST00000548259 TOMM40O96008 361 aa11.95□□□□□ -0.5
VPS29-204ENST00000548259 FAM219AQ8IW50 185 aa11.95□□□□□ -0.5
VPS29-204ENST00000548259 CCDC71LQ8N9Z2 235 aa11.95□□□□□ -0.5
VPS29-204ENST00000548259 OR52E5Q8NH55 327 aa11.95□□□□□ -0.5
VPS29-204ENST00000548259 GPX8Q8TED1 209 aa11.95□□□□□ -0.5
VPS29-204ENST00000548259 TP53RKQ96S44 253 aa11.95□□□□□ -0.5
VPS29-204ENST00000548259 COPZ2Q9P299 210 aa11.95□□□□□ -0.5
VPS29-204ENST00000548259 KLK11Q9UBX7 282 aa11.95□□□□□ -0.5
VPS29-204ENST00000548259 M0QYG6 137 aa11.94□□□□□ -0.5
VPS29-204ENST00000548259 C2orf83Q53S99 150 aa11.94□□□□□ -0.5
VPS29-204ENST00000548259 GDF5OSQ5U4N7 250 aa11.94□□□□□ -0.5
VPS29-204ENST00000548259 SPATA12Q7Z6I5 190 aa11.94□□□□□ -0.5
VPS29-204ENST00000548259 ZNF709Q8N972 641 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms