RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-211	ENST00000546304		I3L2K1	104 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304		K7EPK0	472 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	CCL24	O00175	119 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	TMEM50A	O95807	157 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	MT-CO2	P00403	227 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	TRBV12-3	P01733	135 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	IGHV3-23	P01764	117 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	OR8U8	P0C7N1	319 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	PET100	P0DJ07	73 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	GPR183	P32249	361 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	RRAS2	P62070	204 aa	Predicted RBP	4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	NHLH2	Q02577	135 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	ZNF616	Q08AN1	781 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	RAB32	Q13637	225 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	FCN2	Q15485	313 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	LRRC37A5P	Q49AS3	106 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	FAM209B	Q5JX69	171 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	ZNF343	Q6P1L6	599 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	SLC16A13	Q7RTY0	426 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	NOXA1	Q86UR1	476 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	OR11H7	Q8NGC8	314 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	ZNF502	Q8TBZ5	544 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	RNASEH2C	Q8TDP1	164 aa	Known RBP	4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	VN1R17P	Q8TDU5	208 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	DUX3	Q96PT4	197 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	OR4C12	Q96R67	309 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	RAB40C	Q96S21	281 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	NMES1	Q9C002	83 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	C21orf62	Q9NYP8	219 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	DKK2	Q9UBU2	259 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	LSM5	Q9Y4Y9	91 aa	Known RBP	4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304		S4R3C0	116 aa		4.87	□□□□□ -1.63
PRKDC-211	ENST00000546304	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	TRBV7-1	A0A0A6YYK4	115 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	RPS10-NUDT3	A0A1W2PQS6	291 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	OR2T8	A6NH00	312 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	LINC01619	G3V211	115 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304		L7N2F9	121 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	BMPR1B	O00238	502 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	TSC22D2	O75157	780 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	IGHV3-48	P01763	117 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	IFNA4	P05014	189 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	GIP	P09681	153 aa	Predicted RBP	4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	CXCL3	P19876	107 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	PVALB	P20472	110 aa	Predicted RBP	4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	ZP3	P21754	424 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	HOXD3	P31249	432 aa	Predicted RBP	4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	ARL3	P36405	182 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	MYCNOS	P40205	109 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	ATP5I	P56385	69 aa	Predicted RBP	4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	TAS2R30	P59541	319 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	RAB11A	P62491	216 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	VAMP2	P63027	116 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	RPP30	P78346	268 aa	Known RBP	4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	CYCS	P99999	105 aa	Known RBP	4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	IL15RA	Q13261	267 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	BEAN1	Q3B7T3	259 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304		Q56UQ5	140 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	TOR2A	Q5JU69	321 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	SPANXN5	Q5MJ07	72 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	CLEC19A	Q6UXS0	136 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	ACOT7L	Q6ZUV0	252 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	UBAC2	Q8NBM4	344 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	OR11H1	Q8NG94	326 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	OR1N2	Q8NGR9	330 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	SCARB1	Q8WTV0	552 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	PPP1R1C	Q8WVI7	109 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	BSCL2	Q96G97	398 aa	Predicted RBP	4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	ATP6V0B	Q99437	205 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	FNDC4	Q9H6D8	234 aa	Predicted RBP	4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	RANGRF	Q9HD47	186 aa	Predicted RBP	4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	FAM30A	Q9NZY2	134 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	C11orf21	Q9P2W6	132 aa		4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	PEF1	Q9UBV8	284 aa	Known RBP	4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	PAIP2B	Q9ULR5	123 aa	Known RBP	4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	STRAP	Q9Y3F4	350 aa	Known RBP	4.86	□□□□□ -1.63
PRKDC-211	ENST00000546304	SORL1	Q92673	2214 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	PRSS46	E5RG02	174 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	PPP5D1	E7EU14	171 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	TGOLN2	O43493	480 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	SCGB2A1	O75556	95 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	DEDD	O75618	318 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	HSPB1	P04792	205 aa	Known RBP	4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	METTL15P1	P0C7V9	234 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	SLC25A4	P12235	298 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	FCGR2B	P31994	310 aa	Predicted RBP	4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	NPBWR1	P48145	328 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	CAV2	P51636	162 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	RND2	P52198	227 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	PAX9	P55771	341 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	RPEL1	Q2QD12	228 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	ETFRF1	Q6IPR1	90 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	ACSM6	Q6P461	480 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	SPSB3	Q6PJ21	355 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	TMEM14EP	Q6UXP3	125 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	STX12	Q86Y82	276 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	OR4X1	Q8NH49	305 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	ASB13	Q8WXK3	278 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	DPF1	Q92782	380 aa		4.85	□□□□□ -1.63
PRKDC-211	ENST00000546304	SMIM8	Q96KF7	97 aa		4.85	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 37 ms