RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 OPN1MWP04001 364 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 LINC00869P0C866 280 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 OPN1MW2P0DN77 364 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 OPN1MW3P0DN78 364 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 AREGP15514 252 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 TMEM11P17152 192 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 CTRB1P17538 263 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 OR10J1P30954 320 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 FCGR2BP31994 310 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-239ENST00000545694 HES1Q14469 280 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 FXYD3Q14802 87 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 MIC13Q5XKP0 118 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 CRYBG3Q68DQ2 2970 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 CTRB2Q6GPI1 263 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 KRTAP5-3Q6L8H2 238 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 PRSS57Q6UWY2 283 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 SPNS3Q6ZMD2 512 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 C16orf82Q7Z2V1 217 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 TTC9CQ8N5M4 171 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 CYB561D1Q8N8Q1 229 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 OR4X1Q8NH49 305 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 RXFP4Q8TDU9 374 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 ARPC1AQ92747 370 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 RITA1Q96K30 269 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 UHRF2Q96PU4 802 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 TXN2Q99757 166 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 CTDSP1Q9GZU7 261 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 MEGF9Q9H1U4 602 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 FBXL15Q9H469 300 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 SLC25A22Q9H936 323 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 DNAJC4Q9NNZ3 241 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 ASH1LQ9NR48 2969 aaKnown RBP4.92□□□□□ -1.62
SYNE1-239ENST00000545694 GAR1Q9NY12 217 aaKnown RBP4.92□□□□□ -1.62
SYNE1-239ENST00000545694 RFNGQ9Y644 331 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 PRRC2AP48634 2157 aaKnown RBP4.92□□□□□ -1.62
SYNE1-239ENST00000545694 ABCA12Q86UK0 2595 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 IGHV1-69DA0A0B4J2H0 117 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 IGHV4-61A0A0C4DH41 118 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 CENPVL3A0A0U1RRI6 287 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 A0A1W2PRE2 83 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 C7orf77A4D0Y5 90 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 C11orf94C9JXX5 98 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 E7EUB6 86 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 H3BQ15 152 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 M0R036 132 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 TGOLN2O43493 480 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 IGHV1-69P01742 117 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 MT-ND4LP03901 98 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 MSMBP08118 114 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 C8orf88P0DMB2 117 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 DEFA4P12838 97 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 MYOD1P15172 320 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 GCHFRP30047 84 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 SAA4P35542 130 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 NPBWR1P48145 328 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 FGF8P55075 233 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-239ENST00000545694 CD81P60033 236 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 KLRD1Q13241 179 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 RNF212Q495C1 297 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 AWAT1Q58HT5 328 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 LDLRAD2Q5SZI1 272 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 ATRAIDQ6UW56 229 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 SSX7Q7RTT5 188 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 LHFPL4Q7Z7J7 247 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 TEX29Q8N6K0 151 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 ABHD5Q8WTS1 349 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 SSMEM1Q8WWF3 244 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 MBD6Q96DN6 1003 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 PERPQ96FX8 193 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 BTF3L4Q96K17 158 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 RASL11BQ9BPW5 248 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 SLC25A33Q9BSK2 321 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 FNDC4Q9H6D8 234 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-239ENST00000545694 TNFRSF19Q9NS68 423 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 DOK5Q9P104 306 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 NAT8Q9UHE5 227 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 PITPNC1Q9UKF7 332 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 LY96Q9Y6Y9 160 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 DOPEY2Q9Y3R5 2298 aa4.91□□□□□ -1.62
SYNE1-239ENST00000545694 HELZ2Q9BYK8 2649 aaKnown RBP4.9□□□□□ -1.62
SYNE1-239ENST00000545694 IGKV1OR2-108A0A075B7D4 117 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 A0A1B0GV50 99 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 A0A1W2PRD5 423 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 A0A1W2PRF3 423 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 A0A1W2PRM7 423 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 PSMB11A5LHX3 300 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 NCBP2LA6PVI3 153 aaKnown RBP4.9□□□□□ -1.63
SYNE1-239ENST00000545694 ZNF727A8MUV8 499 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 I3L2K1 104 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 PPP1R2P9O14990 202 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 COX7A2P2O60397 106 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 SCO1O75880 301 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 BRI3O95415 125 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 PRB1P04280 392 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 ARL14EPLP0DKL9 152 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 FOLR2P14207 255 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 CD99P14209 185 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 CNTFRP26992 372 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 RND2P52198 227 aa4.9□□□□□ -1.63
SYNE1-239ENST00000545694 CRIP2P52943 208 aaPredicted RBP4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms