RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 DIRC3C9JPN6 131 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 USF1P22415 310 aaPredicted RBP12.14□□□□□ -0.47
USP28-214ENST00000545540 Q6ZVH6 145 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 LINC00305Q7Z4B0 112 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 PAXXQ9BUH6 204 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 TUBG2Q9NRH3 451 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 NDUFA4L2Q9NRX3 87 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 CTSZQ9UBR2 303 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 A0A1W2PS18 150 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 C9JCJ5 164 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 FOXA3P55318 350 aaPredicted RBP12.14□□□□□ -0.47
USP28-214ENST00000545540 CX3CL1P78423 397 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 GDF5OSQ5U4N7 250 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 C10orf113Q5VZT2 155 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 TCF24Q7RTU0 167 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 ADTRPQ96IZ2 230 aa12.14□□□□□ -0.47
USP28-214ENST00000545540 LY6HO94772 140 aa12.13□□□□□ -0.47
USP28-214ENST00000545540 SELENOTP62341 195 aa12.13□□□□□ -0.47
USP28-214ENST00000545540 OR1L8Q8NGR8 309 aa12.13□□□□□ -0.47
USP28-214ENST00000545540 TXNDC17Q9BRA2 123 aa12.13□□□□□ -0.47
USP28-214ENST00000545540 TRAV8-1A0A0A6YYK1 113 aa12.13□□□□□ -0.47
USP28-214ENST00000545540 C17orf100A8MU93 164 aa12.13□□□□□ -0.47
USP28-214ENST00000545540 GPX1P07203 203 aa12.13□□□□□ -0.47
USP28-214ENST00000545540 COMPP49747 757 aaPredicted RBP12.13□□□□□ -0.47
USP28-214ENST00000545540 ZNF841Q6ZN19 808 aa12.13□□□□□ -0.47
USP28-214ENST00000545540 CORO2AQ92828 525 aa12.13□□□□□ -0.47
USP28-214ENST00000545540 SPTBN4Q9H254 2564 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 FAM87AP0C7U9 286 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 ZNF137PP52743 207 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 TAS2R45P59539 299 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 C2orf83Q53S99 150 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 BEND2Q8NDZ0 799 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 OR2D3Q8NGH3 330 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 MCRIP2Q9BUT9 160 aaKnown RBP12.12□□□□□ -0.47
USP28-214ENST00000545540 A0A1W2PPI3 338 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 GATA4P43694 442 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 TMEM108Q6UXF1 575 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 PPIAL4EA0A075B759 164 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 PPIAL4DF5H284 164 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 PPIAL4FP0DN26 164 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 COX7A1P24310 79 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 TDGF1P3P51864 188 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 MMDQ15546 238 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 TNXAQ16473 311 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.12□□□□□ -0.47
USP28-214ENST00000545540 LINC00312Q9Y6C7 94 aa12.12□□□□□ -0.47
USP28-214ENST00000545540 KIR2DL5BA0A0G2JN68 375 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 KIR2DL5BA0A0G2JPC4 375 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 PGPA6NDG6 321 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 VWC2LB2RUY7 222 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 C22orf46C9J442 243 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 PPOXP50336 477 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 LINC00322Q6ZN03 302 aaPredicted RBP12.11□□□□□ -0.47
USP28-214ENST00000545540 KIR2DL5AQ8N109 375 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 NUDT10Q8NFP7 164 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 OR5B3Q8NH48 314 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 NUDT11Q96G61 164 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 SFXN3Q9BWM7 321 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 NKX6-3A6NJ46 265 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 DLL1O00548 723 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 APCSP02743 223 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 SLC25A5P05141 298 aaKnown RBP12.11□□□□□ -0.47
USP28-214ENST00000545540 BRS3P32247 399 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 ABHD17AQ96GS6 310 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 IGF2BP2-AS1Q96M15 143 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 ZNF331Q9NQX6 463 aaPredicted RBP12.11□□□□□ -0.47
USP28-214ENST00000545540 ZNF257Q9Y2Q1 563 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 IGKV1D-37A0A075B6S9 117 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 C16orf97H3BN30 126 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 THBDP07204 575 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 BET1LQ9NYM9 111 aa12.11□□□□□ -0.47
USP28-214ENST00000545540 ZNF124Q15973 351 aa12.1□□□□□ -0.47
USP28-214ENST00000545540 Q6ZS92 163 aa12.1□□□□□ -0.47
USP28-214ENST00000545540 ZNF833PQ6ZTB9 187 aa12.1□□□□□ -0.47
USP28-214ENST00000545540 GAL3ST2Q9H3Q3 398 aa12.1□□□□□ -0.47
USP28-214ENST00000545540 H0Y8G0 127 aa12.1□□□□□ -0.47
USP28-214ENST00000545540 POU2AF1Q16633 256 aa12.1□□□□□ -0.47
USP28-214ENST00000545540 RNASEKQ6P5S7 137 aaKnown RBP12.1□□□□□ -0.47
USP28-214ENST00000545540 PRSS33Q8NF86 280 aa12.1□□□□□ -0.47
USP28-214ENST00000545540 NUP35Q8NFH5 326 aa12.1□□□□□ -0.47
USP28-214ENST00000545540 GNB1LQ9BYB4 327 aa12.1□□□□□ -0.47
USP28-214ENST00000545540 DYNLRB1Q9NP97 96 aa12.1□□□□□ -0.47
USP28-214ENST00000545540 HIGD1CA8MV81 97 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 NDUFB3O43676 98 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 NPSP0C0P6 89 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 C3orf79P0CE67 100 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 TNFRSF1AP19438 455 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 PAFAH1B2P68402 229 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 OR4C13Q8NGP0 309 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 NEU1Q99519 415 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 ZNF835Q9Y2P0 537 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 PSMB11A5LHX3 300 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 RAB4AP20338 218 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 ZNF138P52744 262 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 Q56UQ5 140 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 ZNF329Q86UD4 541 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 OR5AN1Q8NGI8 311 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 TSKUQ8WUA8 353 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 ST6GALNAC6Q969X2 333 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 TNFRSF19Q9NS68 423 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms