RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 STXBP6Q8NFX7 210 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 ITLN1Q8WWA0 313 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 ZNF414Q96IQ9 312 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 J3KRW8 73 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 CD40P25942 277 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 LINC00305Q7Z4B0 112 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 PRR33A8MZF0 331 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 PSPNO60542 156 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 SLAQ13239 276 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 MRPL14Q6P1L8 145 aaKnown RBP11.8□□□□□ -0.52
LIMS1-215ENST00000544547 A0A1B0GWB2 263 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 FAM231BA6NCW3 169 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 NDUFS8O00217 210 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 SLC25A17O43808 307 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 IMMP1LQ96LU5 166 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 HIST1H4GQ99525 98 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 PRDM6Q9NQX0 595 aa11.8□□□□□ -0.52
LIMS1-215ENST00000544547 NHP2Q9NX24 153 aaKnown RBP11.8□□□□□ -0.52
LIMS1-215ENST00000544547 CHD7Q9P2D1 2997 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 LINC00473A8K010 186 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 AHRRA9YTQ3 701 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 SYS1-DBNDD2H3BUS1 97 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 NUP35Q8NFH5 326 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 ZNF257Q9Y2Q1 563 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 A0A0G2JLM5 398 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 C9JCJ5 164 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 MYOD1P15172 320 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 DGAT2L7PQ6IED9 249 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 ASCL4Q6XD76 172 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 ASCL5Q7RTU5 278 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 TWIST1Q15672 202 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 DTX1Q86Y01 620 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 KLF14Q8TD94 323 aaPredicted RBP11.79□□□□□ -0.52
LIMS1-215ENST00000544547 C5orf30Q96GV9 206 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 PCDH15Q96QU1 1955 aa11.79□□□□□ -0.52
LIMS1-215ENST00000544547 HTN1P15515 57 aa11.78□□□□□ -0.52
LIMS1-215ENST00000544547 FOXF2Q12947 444 aa11.78□□□□□ -0.52
LIMS1-215ENST00000544547 CALYQ9NYX4 217 aa11.78□□□□□ -0.52
LIMS1-215ENST00000544547 FREM1Q5H8C1 2179 aa11.78□□□□□ -0.52
LIMS1-215ENST00000544547 TMEM238C9JI98 176 aa11.78□□□□□ -0.52
LIMS1-215ENST00000544547 NBEAP1P0C6P0 100 aa11.78□□□□□ -0.52
LIMS1-215ENST00000544547 RPP21Q9H633 154 aaKnown RBP11.78□□□□□ -0.52
LIMS1-215ENST00000544547 GUSBP1Q15486 140 aa11.78□□□□□ -0.52
LIMS1-215ENST00000544547 ECSCRQ19T08 205 aa11.78□□□□□ -0.52
LIMS1-215ENST00000544547 ATP1A1-AS1Q5TC04 95 aa11.78□□□□□ -0.52
LIMS1-215ENST00000544547 IGLV3-32A0A0A0MS00 114 aa11.78□□□□□ -0.52
LIMS1-215ENST00000544547 CELA3BP08861 270 aa11.78□□□□□ -0.52
LIMS1-215ENST00000544547 CACNG7P62955 275 aa11.78□□□□□ -0.52
LIMS1-215ENST00000544547 IGHV2-26A0A0B4J1V2 119 aa11.77□□□□□ -0.52
LIMS1-215ENST00000544547 SAP30O75446 220 aa11.77□□□□□ -0.52
LIMS1-215ENST00000544547 RPL27AP46776 148 aaKnown RBP11.77□□□□□ -0.52
LIMS1-215ENST00000544547 FER1L6-AS1Q8NA97 138 aa11.77□□□□□ -0.52
LIMS1-215ENST00000544547 CD5LO43866 347 aa11.77□□□□□ -0.53
LIMS1-215ENST00000544547 RPL7P18124 248 aaKnown RBP11.77□□□□□ -0.53
LIMS1-215ENST00000544547 PAX2Q02962 417 aa11.77□□□□□ -0.53
LIMS1-215ENST00000544547 MLANAQ16655 118 aa11.77□□□□□ -0.53
LIMS1-215ENST00000544547 FAM201AQ5SY85 155 aa11.77□□□□□ -0.53
LIMS1-215ENST00000544547 SFXN3Q9BWM7 321 aa11.77□□□□□ -0.53
LIMS1-215ENST00000544547 MLNRO43193 412 aa11.77□□□□□ -0.53
LIMS1-215ENST00000544547 ESDP10768 282 aa11.77□□□□□ -0.53
LIMS1-215ENST00000544547 CLDN18P56856 261 aa11.77□□□□□ -0.53
LIMS1-215ENST00000544547 PTPRQQ9UMZ3 2332 aa11.77□□□□□ -0.53
LIMS1-215ENST00000544547 IGHV2-70DA0A0C4DH43 119 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 HOXA4Q00056 320 aaPredicted RBP11.76□□□□□ -0.53
LIMS1-215ENST00000544547 PPP1R32Q7Z5V6 425 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 ZNF714Q96N38 554 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 V9GYV3 84 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 FAM208BQ5VWN6 2430 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 TMEM144Q7Z5S9 345 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 TMEM160Q9NX00 188 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 K7EN84 100 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 DLL1O00548 723 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 SEC11AP67812 179 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 MBNL2Q5VZF2 373 aaKnown RBP11.76□□□□□ -0.53
LIMS1-215ENST00000544547 CCDC144NLQ6NUI1 221 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 GPR82Q96P67 336 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 RABAC1Q9UI14 185 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 KIAA1549LQ6ZVL6 1849 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 SPG11Q96JI7 2443 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 AREGP15514 252 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 DUTP33316 252 aaKnown RBP11.76□□□□□ -0.53
LIMS1-215ENST00000544547 UCNP55089 124 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 ZNF146Q15072 292 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 RBPMS2Q6ZRY4 209 aaKnown RBP11.76□□□□□ -0.53
LIMS1-215ENST00000544547 IFI27L2Q9H2X8 130 aa11.76□□□□□ -0.53
LIMS1-215ENST00000544547 MRPL27Q9P0M9 148 aaKnown RBP11.76□□□□□ -0.53
LIMS1-215ENST00000544547 TRBV20OR9-2A0A075B6H5 130 aa11.75□□□□□ -0.53
LIMS1-215ENST00000544547 A0A1B0GUT8 65 aa11.75□□□□□ -0.53
LIMS1-215ENST00000544547 PSG7Q13046 419 aa11.75□□□□□ -0.53
LIMS1-215ENST00000544547 SSC4DQ8WTU2 575 aa11.75□□□□□ -0.53
LIMS1-215ENST00000544547 KIR3DS1Q14943 382 aa11.75□□□□□ -0.53
LIMS1-215ENST00000544547 SRSF7Q16629 238 aaKnown RBP eCLIP11.75□□□□□ -0.53
LIMS1-215ENST00000544547 KLK15Q9H2R5 256 aa11.75□□□□□ -0.53
LIMS1-215ENST00000544547 ARFGEF3Q5TH69 2177 aa11.75□□□□□ -0.53
LIMS1-215ENST00000544547 TMEM189A5PLL7 270 aa11.75□□□□□ -0.53
LIMS1-215ENST00000544547 PSMB2P49721 201 aa11.75□□□□□ -0.53
LIMS1-215ENST00000544547 SAMD5Q5TGI4 173 aa11.75□□□□□ -0.53
LIMS1-215ENST00000544547 ZNF418Q8TF45 676 aaPredicted RBP11.75□□□□□ -0.53
LIMS1-215ENST00000544547 C19orf24Q9BVV8 132 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms