RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 HBG1P69891 147 aa13.13□□□□□ -0.31
LIG1-204ENST00000542460 HBG2P69892 147 aa13.13□□□□□ -0.31
LIG1-204ENST00000542460 ARL16Q0P5N6 197 aa13.13□□□□□ -0.31
LIG1-204ENST00000542460 HAPLN4Q86UW8 402 aa13.13□□□□□ -0.31
LIG1-204ENST00000542460 GPHB5Q86YW7 130 aa13.13□□□□□ -0.31
LIG1-204ENST00000542460 TMEM217Q8N7C4 229 aa13.13□□□□□ -0.31
LIG1-204ENST00000542460 DLX4Q92988 240 aaPredicted RBP13.13□□□□□ -0.31
LIG1-204ENST00000542460 TRRAPQ9Y4A5 3859 aa13.13□□□□□ -0.31
LIG1-204ENST00000542460 FNDC10F2Z333 226 aa13.13□□□□□ -0.31
LIG1-204ENST00000542460 RPL12P30050 165 aaKnown RBP13.13□□□□□ -0.31
LIG1-204ENST00000542460 OR10J1P30954 320 aa13.13□□□□□ -0.31
LIG1-204ENST00000542460 EWSR1Q01844 656 aaKnown RBP eCLIP13.13□□□□□ -0.31
LIG1-204ENST00000542460 RELQ04864 619 aaPredicted RBP13.13□□□□□ -0.31
LIG1-204ENST00000542460 BAXQ07812 192 aa13.13□□□□□ -0.31
LIG1-204ENST00000542460 SLC38A11Q08AI6 406 aa13.13□□□□□ -0.31
LIG1-204ENST00000542460 FAM106AQ4KMX7 169 aa13.13□□□□□ -0.31
LIG1-204ENST00000542460 PRR31Q5SQ13 230 aa13.13□□□□□ -0.31
LIG1-204ENST00000542460 OR1S2Q8NGQ3 325 aa13.13□□□□□ -0.31
LIG1-204ENST00000542460 IGLC1P0CG04 106 aa13.12□□□□□ -0.31
LIG1-204ENST00000542460 NHLH2Q02577 135 aa13.12□□□□□ -0.31
LIG1-204ENST00000542460 CD300CQ08708 224 aa13.12□□□□□ -0.31
LIG1-204ENST00000542460 C1QL4Q86Z23 238 aa13.12□□□□□ -0.31
LIG1-204ENST00000542460 WFDC9Q8NEX5 89 aa13.12□□□□□ -0.31
LIG1-204ENST00000542460 NPVFQ9HCQ7 196 aa13.12□□□□□ -0.31
LIG1-204ENST00000542460 IGHV3-35A0A0C4DH35 117 aa13.11□□□□□ -0.31
LIG1-204ENST00000542460 SMCO3A2RU48 225 aa13.11□□□□□ -0.31
LIG1-204ENST00000542460 IGKV1-17P01599 117 aa13.11□□□□□ -0.31
LIG1-204ENST00000542460 EIF2B2P49770 351 aaKnown RBP13.11□□□□□ -0.31
LIG1-204ENST00000542460 SYNJ2BPP57105 145 aa13.11□□□□□ -0.31
LIG1-204ENST00000542460 AKR1C1Q04828 323 aa13.11□□□□□ -0.31
LIG1-204ENST00000542460 ATP6V1FQ16864 119 aa13.11□□□□□ -0.31
LIG1-204ENST00000542460 TMEM144Q7Z5S9 345 aa13.11□□□□□ -0.31
LIG1-204ENST00000542460 LILRB2Q8N423 598 aa13.11□□□□□ -0.31
LIG1-204ENST00000542460 VWFP04275 2813 aa13.11□□□□□ -0.31
LIG1-204ENST00000542460 ZFP92A6NM28 416 aa13.1□□□□□ -0.31
LIG1-204ENST00000542460 G3V3Q6 166 aa13.1□□□□□ -0.31
LIG1-204ENST00000542460 LGALS9O00182 355 aa13.1□□□□□ -0.31
LIG1-204ENST00000542460 NDUFA4O00483 81 aa13.1□□□□□ -0.31
LIG1-204ENST00000542460 OVOL1O14753 267 aa13.1□□□□□ -0.31
LIG1-204ENST00000542460 CD33P20138 364 aa13.1□□□□□ -0.31
LIG1-204ENST00000542460 NUP62P37198 522 aaPredicted RBP13.1□□□□□ -0.31
LIG1-204ENST00000542460 YPEL3P61236 119 aaPredicted RBP13.1□□□□□ -0.31
LIG1-204ENST00000542460 TIGITQ495A1 244 aa13.1□□□□□ -0.31
LIG1-204ENST00000542460 ZNF600Q6ZNG1 722 aa13.1□□□□□ -0.31
LIG1-204ENST00000542460 THAP8Q8NA92 274 aa13.1□□□□□ -0.31
LIG1-204ENST00000542460 ST6GAL2Q96JF0 529 aa13.1□□□□□ -0.31
LIG1-204ENST00000542460 FXYD6-FXYD2A0A087WZ82 144 aa13.09□□□□□ -0.31
LIG1-204ENST00000542460 ZNF320A2RRD8 509 aa13.09□□□□□ -0.31
LIG1-204ENST00000542460 REC114Q7Z4M0 266 aa13.09□□□□□ -0.31
LIG1-204ENST00000542460 ZNF546Q86UE3 836 aa13.09□□□□□ -0.31
LIG1-204ENST00000542460 OR5C1Q8NGR4 320 aa13.09□□□□□ -0.31
LIG1-204ENST00000542460 HSPB11Q9Y547 144 aa13.09□□□□□ -0.31
LIG1-204ENST00000542460 WNK1Q9H4A3 2382 aa13.09□□□□□ -0.31
LIG1-204ENST00000542460 IGKV1D-37A0A075B6S9 117 aa13.08□□□□□ -0.31
LIG1-204ENST00000542460 IGKV1OR2-108A0A075B7D4 117 aa13.08□□□□□ -0.31
LIG1-204ENST00000542460 SMLR1H3BR10 107 aa13.08□□□□□ -0.31
LIG1-204ENST00000542460 VWC2Q2TAL6 325 aa13.08□□□□□ -0.31
LIG1-204ENST00000542460 TREML4Q6UXN2 200 aa13.08□□□□□ -0.31
LIG1-204ENST00000542460 INO80EQ8NBZ0 244 aaPredicted RBP13.08□□□□□ -0.31
LIG1-204ENST00000542460 OR9G4Q8NGQ1 327 aa13.08□□□□□ -0.31
LIG1-204ENST00000542460 Q8WTZ3 238 aa13.08□□□□□ -0.31
LIG1-204ENST00000542460 TRGV9Q99603 122 aa13.08□□□□□ -0.31
LIG1-204ENST00000542460 TMEM147Q9BVK8 224 aa13.08□□□□□ -0.31
LIG1-204ENST00000542460 UQCC1Q9NVA1 299 aa13.08□□□□□ -0.31
LIG1-204ENST00000542460 PEMTQ9UBM1 199 aa13.08□□□□□ -0.31
LIG1-204ENST00000542460 YIF1AO95070 293 aa13.08□□□□□ -0.32
LIG1-204ENST00000542460 FABP1P07148 127 aa13.08□□□□□ -0.32
LIG1-204ENST00000542460 TEPPQ6URK8 271 aa13.08□□□□□ -0.32
LIG1-204ENST00000542460 UNQ9165/PRO28630Q6UXU0 137 aa13.08□□□□□ -0.32
LIG1-204ENST00000542460 TMEM190Q8WZ59 177 aa13.08□□□□□ -0.32
LIG1-204ENST00000542460 ZNF414Q96IQ9 312 aa13.08□□□□□ -0.32
LIG1-204ENST00000542460 AQP10Q96PS8 301 aa13.08□□□□□ -0.32
LIG1-204ENST00000542460 TNFSF18Q9UNG2 199 aa13.08□□□□□ -0.32
LIG1-204ENST00000542460 PUS1Q9Y606 427 aaKnown RBP eCLIP13.08□□□□□ -0.32
LIG1-204ENST00000542460 TOMM40O96008 361 aa13.07□□□□□ -0.32
LIG1-204ENST00000542460 RD3LP0DJH9 198 aa13.07□□□□□ -0.32
LIG1-204ENST00000542460 TOMM20LQ6UXN7 152 aa13.07□□□□□ -0.32
LIG1-204ENST00000542460 TCTE3Q8IZS6 198 aa13.07□□□□□ -0.32
LIG1-204ENST00000542460 RCC1LQ96I51 464 aaKnown RBP13.07□□□□□ -0.32
LIG1-204ENST00000542460 MCRIP2Q9BUT9 160 aaKnown RBP13.07□□□□□ -0.32
LIG1-204ENST00000542460 ELOVL1Q9BW60 279 aa13.07□□□□□ -0.32
LIG1-204ENST00000542460 UFC1Q9Y3C8 167 aa13.07□□□□□ -0.32
LIG1-204ENST00000542460 A8MWP6 167 aa13.06□□□□□ -0.32
LIG1-204ENST00000542460 ELLP55199 621 aaPredicted RBP13.06□□□□□ -0.32
LIG1-204ENST00000542460 ZNF90Q03938 601 aa13.06□□□□□ -0.32
LIG1-204ENST00000542460 CLINT1Q14677 625 aa13.06□□□□□ -0.32
LIG1-204ENST00000542460 C20orf24Q9BUV8 137 aa13.06□□□□□ -0.32
LIG1-204ENST00000542460 LSM4Q9Y4Z0 139 aaKnown RBP13.06□□□□□ -0.32
LIG1-204ENST00000542460 K7EMT4 169 aa13.05□□□□□ -0.32
LIG1-204ENST00000542460 PSG1P11464 419 aa13.05□□□□□ -0.32
LIG1-204ENST00000542460 RAB31Q13636 194 aa13.05□□□□□ -0.32
LIG1-204ENST00000542460 OR51G1Q8NGK1 321 aa13.05□□□□□ -0.32
LIG1-204ENST00000542460 ZFAND3Q9H8U3 227 aa13.05□□□□□ -0.32
LIG1-204ENST00000542460 DAZ1Q9NQZ3 744 aaKnown RBP13.05□□□□□ -0.32
LIG1-204ENST00000542460 WDR83OSQ9Y284 106 aa13.05□□□□□ -0.32
LIG1-204ENST00000542460 UBE2L5PA0A1B0GUS4 154 aa13.04□□□□□ -0.32
LIG1-204ENST00000542460 HMSDA8MTL9 139 aa13.04□□□□□ -0.32
LIG1-204ENST00000542460 DFFBO76075 338 aa13.04□□□□□ -0.32
LIG1-204ENST00000542460 SELENOTP62341 195 aa13.04□□□□□ -0.32
LIG1-204ENST00000542460 TM4SF20Q53R12 229 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms