RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 OR1P1Q8NH06 330 aa10□□□□□ -0.81
CCDC42-202ENST00000539522 RNASEH2CQ8TDP1 164 aaKnown RBP10□□□□□ -0.81
CCDC42-202ENST00000539522 SCARB1Q8WTV0 552 aa10□□□□□ -0.81
CCDC42-202ENST00000539522 CACNG8Q8WXS5 425 aa10□□□□□ -0.81
CCDC42-202ENST00000539522 GINS3Q9BRX5 216 aa10□□□□□ -0.81
CCDC42-202ENST00000539522 TMEM147Q9BVK8 224 aa10□□□□□ -0.81
CCDC42-202ENST00000539522 PARD6GQ9BYG4 376 aaPredicted RBP10□□□□□ -0.81
CCDC42-202ENST00000539522 FNDC4Q9H6D8 234 aaPredicted RBP10□□□□□ -0.81
CCDC42-202ENST00000539522 UQCC1Q9NVA1 299 aa10□□□□□ -0.81
CCDC42-202ENST00000539522 UBQLN2Q9UHD9 624 aa10□□□□□ -0.81
CCDC42-202ENST00000539522 IGHV3-21A0A0B4J1V1 117 aa9.99□□□□□ -0.81
CCDC42-202ENST00000539522 FAM223BA6NKX1 122 aa9.99□□□□□ -0.81
CCDC42-202ENST00000539522 FNDC10F2Z333 226 aa9.99□□□□□ -0.81
CCDC42-202ENST00000539522 CYB5BO43169 146 aa9.99□□□□□ -0.81
CCDC42-202ENST00000539522 HIST1H1BP16401 226 aaKnown RBP9.99□□□□□ -0.81
CCDC42-202ENST00000539522 EXOSC2Q13868 293 aaKnown RBP9.99□□□□□ -0.81
CCDC42-202ENST00000539522 VWC2Q2TAL6 325 aa9.99□□□□□ -0.81
CCDC42-202ENST00000539522 SLC25A24Q6NUK1 477 aa9.99□□□□□ -0.81
CCDC42-202ENST00000539522 FAM223AQ8IWN6 122 aa9.99□□□□□ -0.81
CCDC42-202ENST00000539522 LINC00482Q8N8I6 264 aa9.99□□□□□ -0.81
CCDC42-202ENST00000539522 GNPNAT1Q96EK6 184 aaPredicted RBP9.99□□□□□ -0.81
CCDC42-202ENST00000539522 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.98□□□□□ -0.81
CCDC42-202ENST00000539522 PRSS46E5RG02 174 aa9.98□□□□□ -0.81
CCDC42-202ENST00000539522 BMPR1BO00238 502 aa9.98□□□□□ -0.81
CCDC42-202ENST00000539522 IGHV3-48P01763 117 aa9.98□□□□□ -0.81
CCDC42-202ENST00000539522 SEC11BP0C7V7 166 aa9.98□□□□□ -0.81
CCDC42-202ENST00000539522 RAB14P61106 215 aa9.98□□□□□ -0.81
CCDC42-202ENST00000539522 OR11H1Q8NG94 326 aa9.98□□□□□ -0.81
CCDC42-202ENST00000539522 ZNF502Q8TBZ5 544 aa9.98□□□□□ -0.81
CCDC42-202ENST00000539522 USMG5Q96IX5 58 aa9.98□□□□□ -0.81
CCDC42-202ENST00000539522 NPVFQ9HCQ7 196 aa9.98□□□□□ -0.81
CCDC42-202ENST00000539522 ANKRD34BA5PLL1 514 aa9.97□□□□□ -0.81
CCDC42-202ENST00000539522 PPP5D1E7EU14 171 aa9.97□□□□□ -0.81
CCDC42-202ENST00000539522 M0QZ24 198 aa9.97□□□□□ -0.81
CCDC42-202ENST00000539522 CCL24O00175 119 aa9.97□□□□□ -0.81
CCDC42-202ENST00000539522 CORTO00230 105 aa9.97□□□□□ -0.81
CCDC42-202ENST00000539522 SPP1P10451 314 aa9.97□□□□□ -0.81
CCDC42-202ENST00000539522 SLURP1P55000 103 aa9.97□□□□□ -0.81
CCDC42-202ENST00000539522 ATP5G2Q06055 141 aa9.97□□□□□ -0.81
CCDC42-202ENST00000539522 ETFRF1Q6IPR1 90 aa9.97□□□□□ -0.81
CCDC42-202ENST00000539522 ALKAL2Q6UX46 152 aa9.97□□□□□ -0.81
CCDC42-202ENST00000539522 OR1N2Q8NGR9 330 aa9.97□□□□□ -0.81
CCDC42-202ENST00000539522 LRRC20Q8TCA0 184 aa9.97□□□□□ -0.81
CCDC42-202ENST00000539522 WDR61Q9GZS3 305 aaKnown RBP9.97□□□□□ -0.81
CCDC42-202ENST00000539522 SLC25A32Q9H2D1 315 aa9.97□□□□□ -0.81
CCDC42-202ENST00000539522 THYN1Q9P016 225 aa9.97□□□□□ -0.81
CCDC42-202ENST00000539522 A0A0G2JLM5 398 aa9.96□□□□□ -0.82
CCDC42-202ENST00000539522 NUDT19A8MXV4 375 aa9.96□□□□□ -0.82
CCDC42-202ENST00000539522 MPDU1O75352 247 aa9.96□□□□□ -0.82
CCDC42-202ENST00000539522 MT-CO2P00403 227 aa9.96□□□□□ -0.82
CCDC42-202ENST00000539522 ATP6V0CP27449 155 aa9.96□□□□□ -0.82
CCDC42-202ENST00000539522 ADMP35318 185 aa9.96□□□□□ -0.82
CCDC42-202ENST00000539522 MYCNOSP40205 109 aa9.96□□□□□ -0.82
CCDC42-202ENST00000539522 CD69Q07108 199 aa9.96□□□□□ -0.82
CCDC42-202ENST00000539522 HSD17B11Q8NBQ5 300 aa9.96□□□□□ -0.82
CCDC42-202ENST00000539522 TMED6Q8WW62 240 aa9.96□□□□□ -0.82
CCDC42-202ENST00000539522 MISP3Q96FF7 219 aa9.96□□□□□ -0.82
CCDC42-202ENST00000539522 NBEAL1Q6ZS30 2694 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 RPS10-NUDT3A0A1W2PQS6 291 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 HSPB1P04792 205 aaKnown RBP9.95□□□□□ -0.82
CCDC42-202ENST00000539522 EDN2P20800 178 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 RAB5CP51148 216 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 SERF2P84101 59 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 RAB31Q13636 194 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 CLEC19AQ6UXS0 136 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 ZNF709Q8N972 641 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 WFDC9Q8NEX5 89 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 OR4F17Q8NGA8 305 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 OR2G3Q8NGZ4 309 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 VN1R17PQ8TDU5 208 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 RNF141Q8WVD5 230 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 DLX4Q92988 240 aaPredicted RBP9.95□□□□□ -0.82
CCDC42-202ENST00000539522 OR4F4Q96R69 305 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 PSMG3Q9BT73 122 aaPredicted RBP9.95□□□□□ -0.82
CCDC42-202ENST00000539522 CHRDL1Q9BU40 450 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 PEF1Q9UBV8 284 aaKnown RBP9.95□□□□□ -0.82
CCDC42-202ENST00000539522 WDR83OSQ9Y284 106 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 TIMM9Q9Y5J7 89 aa9.95□□□□□ -0.82
CCDC42-202ENST00000539522 UBE2L5PA0A1B0GUS4 154 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 SMCO3A2RU48 225 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 UMAD1C9J7I0 102 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 C17orf112F2Z3M2 114 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 FGF7P21781 194 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 HOXD3P31249 432 aaPredicted RBP9.94□□□□□ -0.82
CCDC42-202ENST00000539522 ZNF616Q08AN1 781 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 GAMTQ14353 236 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 CLLU1Q5K131 121 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 TEPPQ6URK8 271 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 BTNL8Q6UX41 500 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 TREML4Q6UXN2 200 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 IL34Q6ZMJ4 242 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 TMEM144Q7Z5S9 345 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 SLC35E1Q96K37 410 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 CXorf58Q96LI9 332 aa9.94□□□□□ -0.82
CCDC42-202ENST00000539522 LINC01619G3V211 115 aa9.93□□□□□ -0.82
CCDC42-202ENST00000539522 CLEC3BP05452 202 aa9.93□□□□□ -0.82
CCDC42-202ENST00000539522 CTSGP08311 255 aa9.93□□□□□ -0.82
CCDC42-202ENST00000539522 FCGR2BP31994 310 aaPredicted RBP9.93□□□□□ -0.82
CCDC42-202ENST00000539522 GPR183P32249 361 aa9.93□□□□□ -0.82
CCDC42-202ENST00000539522 OPRK1P41145 380 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms