RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	OR2T8	A6NH00	312 aa		11.43	□□□□□ -0.58
CPSF1-208	ENST00000532560	CORT	O00230	105 aa		11.43	□□□□□ -0.58
CPSF1-208	ENST00000532560	MT-CO2	P00403	227 aa		11.43	□□□□□ -0.58
CPSF1-208	ENST00000532560	TNFRSF9	Q07011	255 aa		11.43	□□□□□ -0.58
CPSF1-208	ENST00000532560	PRSS54	Q6PEW0	395 aa		11.43	□□□□□ -0.58
CPSF1-208	ENST00000532560	HAPLN4	Q86UW8	402 aa		11.43	□□□□□ -0.58
CPSF1-208	ENST00000532560	TXN2	Q99757	166 aa		11.43	□□□□□ -0.58
CPSF1-208	ENST00000532560	ZC4H2	Q9NQZ6	224 aa		11.43	□□□□□ -0.58
CPSF1-208	ENST00000532560	SORL1	Q92673	2214 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	TMEM213	A2RRL7	107 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	C2orf70	A6NJV1	201 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	CEBPZOS	A8MTT3	80 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	FAM25E	A8MYX2	175 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	TAAR5	O14804	337 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	LY86	O95711	162 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	SLC25A6	P12236	298 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	TPT1	P13693	172 aa	Known RBP	11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	GP9	P14770	177 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	MFAP4	P55083	255 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560		Q56UQ5	140 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	UQCC3	Q6UW78	93 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	ADAMTSL5	Q6ZMM2	481 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	OR2K2	Q8NGT1	345 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	OR1S1	Q8NH92	325 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	PINX1	Q96BK5	328 aa	Known RBP	11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	C2orf50	Q96LR7	162 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	HSPB7	Q9UBY9	170 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	TMED3	Q9Y3Q3	217 aa		11.42	□□□□□ -0.58
CPSF1-208	ENST00000532560	TEX46	H3BTG2	121 aa		11.41	□□□□□ -0.58
CPSF1-208	ENST00000532560	NXPH3	O95157	252 aa		11.41	□□□□□ -0.58
CPSF1-208	ENST00000532560	ADM	P35318	185 aa		11.41	□□□□□ -0.58
CPSF1-208	ENST00000532560	EIF5AL1	Q6IS14	154 aa	Known RBP	11.41	□□□□□ -0.58
CPSF1-208	ENST00000532560	LCN12	Q6JVE5	192 aa		11.41	□□□□□ -0.58
CPSF1-208	ENST00000532560	UNQ9165/PRO28630	Q6UXU0	137 aa		11.41	□□□□□ -0.58
CPSF1-208	ENST00000532560	UBAC2	Q8NBM4	344 aa		11.41	□□□□□ -0.58
CPSF1-208	ENST00000532560	SLC24A4	Q8NFF2	622 aa		11.41	□□□□□ -0.58
CPSF1-208	ENST00000532560	TMEM190	Q8WZ59	177 aa		11.41	□□□□□ -0.58
CPSF1-208	ENST00000532560	CHRDL1	Q9BU40	450 aa		11.41	□□□□□ -0.58
CPSF1-208	ENST00000532560	ZNF471	Q9BX82	626 aa	Predicted RBP	11.41	□□□□□ -0.58
CPSF1-208	ENST00000532560	HEYL	Q9NQ87	328 aa	Predicted RBP	11.41	□□□□□ -0.58
CPSF1-208	ENST00000532560	MBD2	Q9UBB5	411 aa		11.41	□□□□□ -0.58
CPSF1-208	ENST00000532560	LSM4	Q9Y4Z0	139 aa	Known RBP	11.41	□□□□□ -0.58
CPSF1-208	ENST00000532560	ZNF320	A2RRD8	509 aa		11.4	□□□□□ -0.58
CPSF1-208	ENST00000532560	NDUFA4	O00483	81 aa		11.4	□□□□□ -0.58
CPSF1-208	ENST00000532560	CCS	O14618	274 aa		11.4	□□□□□ -0.58
CPSF1-208	ENST00000532560	NUPL2	O15504	423 aa	Known RBP	11.4	□□□□□ -0.58
CPSF1-208	ENST00000532560	PITX3	O75364	302 aa		11.4	□□□□□ -0.58
CPSF1-208	ENST00000532560	RLN2	P04090	185 aa		11.4	□□□□□ -0.58
CPSF1-208	ENST00000532560	CTSG	P08311	255 aa		11.4	□□□□□ -0.58
CPSF1-208	ENST00000532560	FOLR2	P14207	255 aa		11.4	□□□□□ -0.58
CPSF1-208	ENST00000532560	ELL	P55199	621 aa	Predicted RBP	11.4	□□□□□ -0.58
CPSF1-208	ENST00000532560	C2orf83	Q53S99	150 aa		11.4	□□□□□ -0.58
CPSF1-208	ENST00000532560	DYNLRB2	Q8TF09	96 aa		11.4	□□□□□ -0.58
CPSF1-208	ENST00000532560	AQP10	Q96PS8	301 aa		11.4	□□□□□ -0.58
CPSF1-208	ENST00000532560	HIPK2	Q9H2X6	1198 aa		11.4	□□□□□ -0.58
CPSF1-208	ENST00000532560	UFC1	Q9Y3C8	167 aa		11.4	□□□□□ -0.58
CPSF1-208	ENST00000532560	IGHV3-35	A0A0C4DH35	117 aa		11.39	□□□□□ -0.59
CPSF1-208	ENST00000532560	RAB19	A4D1S5	217 aa		11.39	□□□□□ -0.59
CPSF1-208	ENST00000532560	FAM90A26	D6RGX4	464 aa		11.39	□□□□□ -0.59
CPSF1-208	ENST00000532560	IFNA21	P01568	189 aa		11.39	□□□□□ -0.59
CPSF1-208	ENST00000532560	CBLN1	P23435	193 aa		11.39	□□□□□ -0.59
CPSF1-208	ENST00000532560	OPRK1	P41145	380 aa		11.39	□□□□□ -0.59
CPSF1-208	ENST00000532560	NPBWR1	P48145	328 aa		11.39	□□□□□ -0.59
CPSF1-208	ENST00000532560	REL	Q04864	619 aa	Predicted RBP	11.39	□□□□□ -0.59
CPSF1-208	ENST00000532560	DEFB121	Q5J5C9	76 aa		11.39	□□□□□ -0.59
CPSF1-208	ENST00000532560	RNASEH2C	Q8TDP1	164 aa	Known RBP	11.39	□□□□□ -0.59
CPSF1-208	ENST00000532560	DTD1	Q8TEA8	209 aa		11.39	□□□□□ -0.59
CPSF1-208	ENST00000532560	MARC2	Q969Z3	335 aa		11.39	□□□□□ -0.59
CPSF1-208	ENST00000532560	FNDC4	Q9H6D8	234 aa	Predicted RBP	11.39	□□□□□ -0.59
CPSF1-208	ENST00000532560	TECR	Q9NZ01	308 aa	Known RBP	11.39	□□□□□ -0.59
CPSF1-208	ENST00000532560	GNG7	O60262	68 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	IGHV3-48	P01763	117 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	HOXB5	P09067	269 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	C8orf88	P0DMB2	117 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	EDN2	P20800	178 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	NPY1R	P25929	384 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	IL15RA	Q13261	267 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	DEFB114	Q30KQ6	69 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	CD300E	Q496F6	205 aa	Predicted RBP	11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	LRRC37A5P	Q49AS3	106 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	TM4SF20	Q53R12	229 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	GGNBP1	Q5YKI7	109 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	TMEM170A	Q8WVE7	144 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	CACNG8	Q8WXS5	425 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	ZNF414	Q96IQ9	312 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	RBKS	Q9H477	322 aa		11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	DAZ1	Q9NQZ3	744 aa	Known RBP	11.38	□□□□□ -0.59
CPSF1-208	ENST00000532560	BAP18	Q8IXM2	172 aa		11.37	□□□□□ -0.59
CPSF1-208	ENST00000532560	OR4X1	Q8NH49	305 aa		11.37	□□□□□ -0.59
CPSF1-208	ENST00000532560	RNF141	Q8WVD5	230 aa		11.37	□□□□□ -0.59
CPSF1-208	ENST00000532560	PCNP	Q8WW12	178 aa	Known RBP	11.37	□□□□□ -0.59
CPSF1-208	ENST00000532560	B9D2	Q9BPU9	175 aa		11.37	□□□□□ -0.59
CPSF1-208	ENST00000532560	RNF126	Q9BV68	326 aa		11.37	□□□□□ -0.59
CPSF1-208	ENST00000532560	MRPL27	Q9P0M9	148 aa	Known RBP	11.37	□□□□□ -0.59
CPSF1-208	ENST00000532560	SMAD5-AS1	Q9Y6J3	95 aa		11.37	□□□□□ -0.59
CPSF1-208	ENST00000532560	IZUMO1R	A6ND01	250 aa		11.36	□□□□□ -0.59
CPSF1-208	ENST00000532560	C15orf62	A8K5M9	175 aa		11.36	□□□□□ -0.59
CPSF1-208	ENST00000532560		K7EMT4	169 aa		11.36	□□□□□ -0.59
CPSF1-208	ENST00000532560	ATP5I	P56385	69 aa	Predicted RBP	11.36	□□□□□ -0.59
CPSF1-208	ENST00000532560	SAT2	Q96F10	170 aa	Predicted RBP	11.36	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms