RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 YAE1D1Q9NRH1 226 aa14.94□□□□□ -0.02
VPS28-207ENST00000526977 NDUFS6O75380 124 aaKnown RBP14.93□□□□□ -0.02
VPS28-207ENST00000526977 CXorf1O96002 111 aa14.93□□□□□ -0.02
VPS28-207ENST00000526977 IGHV3-48P01763 117 aa14.93□□□□□ -0.02
VPS28-207ENST00000526977 SPNS3Q6ZMD2 512 aa14.93□□□□□ -0.02
VPS28-207ENST00000526977 NPIPB3Q92617 1050 aa14.93□□□□□ -0.02
VPS28-207ENST00000526977 ISOC2Q96AB3 205 aa14.93□□□□□ -0.02
VPS28-207ENST00000526977 MRPL36Q9P0J6 103 aaKnown RBP14.93□□□□□ -0.02
VPS28-207ENST00000526977 TMEM250H0YL14 139 aa14.93□□□□□ -0.02
VPS28-207ENST00000526977 H3BUX3 64 aa14.93□□□□□ -0.02
VPS28-207ENST00000526977 C19orf35Q6ZS72 473 aa14.93□□□□□ -0.02
VPS28-207ENST00000526977 Q8N9W7 124 aa14.93□□□□□ -0.02
VPS28-207ENST00000526977 OR4F5Q8NH21 305 aa14.93□□□□□ -0.02
VPS28-207ENST00000526977 SRSF12Q8WXF0 261 aaKnown RBP14.93□□□□□ -0.02
VPS28-207ENST00000526977 C22orf15Q8WYQ4 148 aa14.93□□□□□ -0.02
VPS28-207ENST00000526977 OR4F4Q96R69 305 aa14.93□□□□□ -0.02
VPS28-207ENST00000526977 FLNBO75369 2602 aaKnown RBP14.93□□□□□ -0.02
VPS28-207ENST00000526977 CRYBA1P05813 215 aa14.92□□□□□ -0.02
VPS28-207ENST00000526977 ZNF562Q6V9R5 426 aa14.92□□□□□ -0.02
VPS28-207ENST00000526977 HIST1H2BAQ96A08 127 aa14.92□□□□□ -0.02
VPS28-207ENST00000526977 RASL11BQ9BPW5 248 aa14.92□□□□□ -0.02
VPS28-207ENST00000526977 NAV3Q8IVL0 2385 aa14.92□□□□□ -0.02
VPS28-207ENST00000526977 CNIH1O95406 144 aa14.92□□□□□ -0.02
VPS28-207ENST00000526977 CRYGCP07315 174 aa14.92□□□□□ -0.02
VPS28-207ENST00000526977 FAM78BQ5VT40 261 aa14.92□□□□□ -0.02
VPS28-207ENST00000526977 CYP2G1PQ6ZSU1 146 aa14.92□□□□□ -0.02
VPS28-207ENST00000526977 OR1P1Q8NH06 330 aa14.92□□□□□ -0.02
VPS28-207ENST00000526977 SLC25A33Q9BSK2 321 aa14.92□□□□□ -0.02
VPS28-207ENST00000526977 PRDM13Q9H4Q3 707 aa14.92□□□□□ -0.02
VPS28-207ENST00000526977 TMEM160Q9NX00 188 aa14.92□□□□□ -0.02
VPS28-207ENST00000526977 IGKV1D-37A0A075B6S9 117 aa14.91□□□□□ -0.02
VPS28-207ENST00000526977 ZNF727A8MUV8 499 aa14.91□□□□□ -0.02
VPS28-207ENST00000526977 C11orf94C9JXX5 98 aa14.91□□□□□ -0.02
VPS28-207ENST00000526977 HNF1AP20823 631 aa14.91□□□□□ -0.02
VPS28-207ENST00000526977 UBE2G2P60604 165 aa14.91□□□□□ -0.02
VPS28-207ENST00000526977 MIR17HGQ75NE6 70 aa14.91□□□□□ -0.02
VPS28-207ENST00000526977 THAP8Q8NA92 274 aa14.91□□□□□ -0.02
VPS28-207ENST00000526977 MISP3Q96FF7 219 aa14.91□□□□□ -0.02
VPS28-207ENST00000526977 SDF2L1Q9HCN8 221 aa14.91□□□□□ -0.02
VPS28-207ENST00000526977 MOB4Q9Y3A3 225 aa14.91□□□□□ -0.02
VPS28-207ENST00000526977 A6NDX4 124 aa14.9□□□□□ -0.02
VPS28-207ENST00000526977 SRP14P37108 136 aaKnown RBP14.9□□□□□ -0.02
VPS28-207ENST00000526977 IER3P46695 156 aa14.9□□□□□ -0.02
VPS28-207ENST00000526977 ETFRF1Q6IPR1 90 aa14.9□□□□□ -0.02
VPS28-207ENST00000526977 Q6YL49 198 aa14.9□□□□□ -0.02
VPS28-207ENST00000526977 C16orf82Q7Z2V1 217 aa14.9□□□□□ -0.02
VPS28-207ENST00000526977 OR5R1Q8NH85 324 aa14.9□□□□□ -0.02
VPS28-207ENST00000526977 SRSF8Q9BRL6 282 aaKnown RBP14.9□□□□□ -0.02
VPS28-207ENST00000526977 C19orf24Q9BVV8 132 aa14.9□□□□□ -0.02
VPS28-207ENST00000526977 FUT9Q9Y231 359 aa14.9□□□□□ -0.02
VPS28-207ENST00000526977 F11RQ9Y624 299 aaKnown RBP14.9□□□□□ -0.02
VPS28-207ENST00000526977 A0A087WWC5 75 aa14.9□□□□□ -0.02
VPS28-207ENST00000526977 MDFIC2A0A1B0GVS7 189 aa14.9□□□□□ -0.02
VPS28-207ENST00000526977 HLA-DRB1P01911 266 aa14.9□□□□□ -0.02
VPS28-207ENST00000526977 NPPCP23582 126 aa14.9□□□□□ -0.02
VPS28-207ENST00000526977 GCHFRP30047 84 aa14.9□□□□□ -0.02
VPS28-207ENST00000526977 DMRT1Q9Y5R6 373 aa14.9□□□□□ -0.02
VPS28-207ENST00000526977 M0QZK8 103 aa14.89□□□□□ -0.03
VPS28-207ENST00000526977 MT-ND4LP03901 98 aa14.89□□□□□ -0.03
VPS28-207ENST00000526977 FOSL1P15407 271 aa14.89□□□□□ -0.03
VPS28-207ENST00000526977 RND2P52198 227 aa14.89□□□□□ -0.03
VPS28-207ENST00000526977 CX3CL1P78423 397 aa14.89□□□□□ -0.03
VPS28-207ENST00000526977 FLI1Q01543 452 aaPredicted RBP14.89□□□□□ -0.03
VPS28-207ENST00000526977 FXYD3Q14802 87 aa14.89□□□□□ -0.03
VPS28-207ENST00000526977 CST9LP1Q5W188 147 aa14.89□□□□□ -0.03
VPS28-207ENST00000526977 TMEM219Q86XT9 240 aa14.89□□□□□ -0.03
VPS28-207ENST00000526977 TMEM37Q8WXS4 190 aa14.89□□□□□ -0.03
VPS28-207ENST00000526977 RPUSD4Q96CM3 377 aaKnown RBP14.89□□□□□ -0.03
VPS28-207ENST00000526977 SMIM7Q9BQ49 75 aa14.89□□□□□ -0.03
VPS28-207ENST00000526977 MLXQ9UH92 298 aa14.89□□□□□ -0.03
VPS28-207ENST00000526977 TCRBV4S1A1TA0A5B7 111 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 PSMB11A5LHX3 300 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 FOLR2P14207 255 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 ATP5G3P48201 142 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 ZNF90Q03938 601 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 PNRC1Q12796 327 aaPredicted RBP14.88□□□□□ -0.03
VPS28-207ENST00000526977 ZNF674Q2M3X9 581 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 FAM24BQ8N5W8 94 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 C5orf56Q8N8D9 126 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 YPEL4Q96NS1 127 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 BAHCC1Q9P281 2608 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 OTOGQ6ZRI0 2925 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 B4DEV8 164 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 OR2C1O95371 312 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 OR5G3P0C626 314 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 LY6EQ16553 131 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 TMEM241Q24JQ0 296 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 PARLQ9H300 379 aa14.88□□□□□ -0.03
VPS28-207ENST00000526977 CORTO00230 105 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 MT-CO2P00403 227 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 IL17RELQ6ZVW7 336 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 TMUB1Q9BVT8 246 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 DNAJC4Q9NNZ3 241 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 NAT8Q9UHE5 227 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 ACANP16112 2415 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 PDE6DO43924 150 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 CLN5O75503 358 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 IGHV4-59P01825 116 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 CD99P14209 185 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 SCGB2A2Q13296 93 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms