RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 MISP3Q96FF7 219 aa17.05■□□□□ 0.32
VPS28-205ENST00000526204 K7ENP7 123 aa17.05■□□□□ 0.32
VPS28-205ENST00000526204 AMY1AP04745 511 aa17.05■□□□□ 0.32
VPS28-205ENST00000526204 CRYGBP07316 175 aa17.05■□□□□ 0.32
VPS28-205ENST00000526204 TNXAQ16473 311 aa17.05■□□□□ 0.32
VPS28-205ENST00000526204 ZGRF1Q86YA3 2104 aa17.05■□□□□ 0.32
VPS28-205ENST00000526204 TMEM116Q8NCL8 245 aa17.05■□□□□ 0.32
VPS28-205ENST00000526204 INSIG2Q9Y5U4 225 aa17.05■□□□□ 0.32
VPS28-205ENST00000526204 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.04■□□□□ 0.32
VPS28-205ENST00000526204 HLA-DQA1P01909 254 aa17.04■□□□□ 0.32
VPS28-205ENST00000526204 SIGLEC9Q9Y336 463 aa17.04■□□□□ 0.32
VPS28-205ENST00000526204 DMXL2Q8TDJ6 3036 aa17.03■□□□□ 0.32
VPS28-205ENST00000526204 IZUMO1RA6ND01 250 aa17.03■□□□□ 0.32
VPS28-205ENST00000526204 RBP4P02753 201 aa17.03■□□□□ 0.32
VPS28-205ENST00000526204 COMPP49747 757 aaPredicted RBP17.03■□□□□ 0.32
VPS28-205ENST00000526204 PAX2Q02962 417 aa17.03■□□□□ 0.32
VPS28-205ENST00000526204 OR10J3Q5JRS4 329 aa17.03■□□□□ 0.32
VPS28-205ENST00000526204 C1orf194Q5T5A4 169 aa17.03■□□□□ 0.32
VPS28-205ENST00000526204 HCP5Q6MZN7 132 aa17.03■□□□□ 0.32
VPS28-205ENST00000526204 LINC00479Q96M42 142 aa17.03■□□□□ 0.32
VPS28-205ENST00000526204 CLEC7AQ9BXN2 247 aa17.03■□□□□ 0.32
VPS28-205ENST00000526204 C22orf46C9J442 243 aa17.03■□□□□ 0.32
VPS28-205ENST00000526204 BUB1B-PAK6H3BSN5 160 aa17.03■□□□□ 0.32
VPS28-205ENST00000526204 TCL1AP56279 114 aa17.03■□□□□ 0.32
VPS28-205ENST00000526204 CHRDL1Q9BU40 450 aa17.03■□□□□ 0.32
VPS28-205ENST00000526204 IGHV1-3A0A0C4DH29 117 aa17.02■□□□□ 0.32
VPS28-205ENST00000526204 SPINK4O60575 86 aa17.02■□□□□ 0.32
VPS28-205ENST00000526204 ORM2P19652 201 aa17.02■□□□□ 0.32
VPS28-205ENST00000526204 MYCNOSP40205 109 aa17.02■□□□□ 0.32
VPS28-205ENST00000526204 RASL11AQ6T310 242 aa17.02■□□□□ 0.32
VPS28-205ENST00000526204 ANKRD11Q6UB99 2663 aaPredicted RBP17.02■□□□□ 0.32
VPS28-205ENST00000526204 MAP1BP46821 2468 aaKnown RBP17.02■□□□□ 0.31
VPS28-205ENST00000526204 BRS3P32247 399 aa17.02■□□□□ 0.31
VPS28-205ENST00000526204 ZNF841Q6ZN19 808 aa17.02■□□□□ 0.31
VPS28-205ENST00000526204 Q6ZWC4 215 aa17.02■□□□□ 0.31
VPS28-205ENST00000526204 OR1B1Q8NGR6 318 aa17.02■□□□□ 0.31
VPS28-205ENST00000526204 SAMD10Q9BYL1 202 aa17.02■□□□□ 0.31
VPS28-205ENST00000526204 POLR3KQ9Y2Y1 108 aaPredicted RBP17.02■□□□□ 0.31
VPS28-205ENST00000526204 MFAP2P55001 183 aa17.01■□□□□ 0.31
VPS28-205ENST00000526204 PPP1R27Q86WC6 154 aa17.01■□□□□ 0.31
VPS28-205ENST00000526204 SMIM12Q96EX1 92 aa17.01■□□□□ 0.31
VPS28-205ENST00000526204 C2orf88Q9BSF0 95 aa17.01■□□□□ 0.31
VPS28-205ENST00000526204 GNB4Q9HAV0 340 aa17.01■□□□□ 0.31
VPS28-205ENST00000526204 EPDR1Q9UM22 224 aa17.01■□□□□ 0.31
VPS28-205ENST00000526204 HYPMO75409 117 aa17■□□□□ 0.31
VPS28-205ENST00000526204 SLC35B1P78383 322 aa17■□□□□ 0.31
VPS28-205ENST00000526204 TMEM183BQ1AE95 376 aa17■□□□□ 0.31
VPS28-205ENST00000526204 NHLRC2Q8NBF2 726 aa17■□□□□ 0.31
VPS28-205ENST00000526204 HSPB9Q9BQS6 159 aa17■□□□□ 0.31
VPS28-205ENST00000526204 ZNF331Q9NQX6 463 aaPredicted RBP17■□□□□ 0.31
VPS28-205ENST00000526204 ROS1P08922 2347 aa17■□□□□ 0.31
VPS28-205ENST00000526204 KIR2DL5BA0A0G2JN68 375 aa17■□□□□ 0.31
VPS28-205ENST00000526204 KIR2DL5BA0A0G2JPC4 375 aa17■□□□□ 0.31
VPS28-205ENST00000526204 ZNF705FA8MVS1 300 aaPredicted RBP17■□□□□ 0.31
VPS28-205ENST00000526204 MOSP00540 346 aa17■□□□□ 0.31
VPS28-205ENST00000526204 ZNF705DP0CH99 300 aaPredicted RBP17■□□□□ 0.31
VPS28-205ENST00000526204 ZNF705BP0CI00 300 aaPredicted RBP17■□□□□ 0.31
VPS28-205ENST00000526204 FOXC1Q12948 553 aa17■□□□□ 0.31
VPS28-205ENST00000526204 MRPL54Q6P161 138 aaKnown RBP17■□□□□ 0.31
VPS28-205ENST00000526204 KIR2DL5AQ8N109 375 aa17■□□□□ 0.31
VPS28-205ENST00000526204 WIPF2Q8TF74 440 aaPredicted RBP17■□□□□ 0.31
VPS28-205ENST00000526204 MBD6Q96DN6 1003 aa17■□□□□ 0.31
VPS28-205ENST00000526204 GRAMD2BQ96HH9 432 aa17■□□□□ 0.31
VPS28-205ENST00000526204 RNF5Q99942 180 aa17■□□□□ 0.31
VPS28-205ENST00000526204 F11RQ9Y624 299 aaKnown RBP17■□□□□ 0.31
VPS28-205ENST00000526204 PLAUP00749 431 aa16.99■□□□□ 0.31
VPS28-205ENST00000526204 CNTFRP26992 372 aa16.99■□□□□ 0.31
VPS28-205ENST00000526204 PLP1P60201 277 aa16.99■□□□□ 0.31
VPS28-205ENST00000526204 UBE2G1P62253 170 aa16.99■□□□□ 0.31
VPS28-205ENST00000526204 MUC15Q8N387 334 aa16.99■□□□□ 0.31
VPS28-205ENST00000526204 SIGLECL1Q8N7X8 197 aa16.99■□□□□ 0.31
VPS28-205ENST00000526204 TBX15Q96SF7 602 aa16.99■□□□□ 0.31
VPS28-205ENST00000526204 PPIAL4CA0A0B4J2A2 164 aa16.99■□□□□ 0.31
VPS28-205ENST00000526204 PPIAL4GP0DN37 164 aa16.99■□□□□ 0.31
VPS28-205ENST00000526204 USF2Q15853 346 aaPredicted RBP16.99■□□□□ 0.31
VPS28-205ENST00000526204 KLF12Q9Y4X4 402 aa16.99■□□□□ 0.31
VPS28-205ENST00000526204 ACACAQ13085 2346 aa16.98■□□□□ 0.31
VPS28-205ENST00000526204 TRAV34A0A0B4J273 112 aa16.98■□□□□ 0.31
VPS28-205ENST00000526204 APCSP02743 223 aa16.98■□□□□ 0.31
VPS28-205ENST00000526204 NBEAP1P0C6P0 100 aa16.98■□□□□ 0.31
VPS28-205ENST00000526204 HIST1H1EP10412 219 aaKnown RBP16.98■□□□□ 0.31
VPS28-205ENST00000526204 NUDT10Q8NFP7 164 aa16.98■□□□□ 0.31
VPS28-205ENST00000526204 C8orf46Q8TAG6 207 aa16.98■□□□□ 0.31
VPS28-205ENST00000526204 RPEQ96AT9 228 aa16.98■□□□□ 0.31
VPS28-205ENST00000526204 NUDT11Q96G61 164 aa16.98■□□□□ 0.31
VPS28-205ENST00000526204 ATMQ13315 3056 aa16.98■□□□□ 0.31
VPS28-205ENST00000526204 F2Z2F3 143 aa16.97■□□□□ 0.31
VPS28-205ENST00000526204 SLC25A5P05141 298 aaKnown RBP16.97■□□□□ 0.31
VPS28-205ENST00000526204 FAM168AQ92567 244 aa16.97■□□□□ 0.31
VPS28-205ENST00000526204 PGPA6NDG6 321 aa16.97■□□□□ 0.31
VPS28-205ENST00000526204 TEX22C9J3V5 150 aa16.97■□□□□ 0.31
VPS28-205ENST00000526204 LYNX1G3V0Z9 82 aa16.97■□□□□ 0.31
VPS28-205ENST00000526204 CA1P00915 261 aaPredicted RBP16.97■□□□□ 0.31
VPS28-205ENST00000526204 GPX1P07203 203 aa16.97■□□□□ 0.31
VPS28-205ENST00000526204 LYNX1P0DP58 116 aa16.97■□□□□ 0.31
VPS28-205ENST00000526204 FBXL19-AS1Q494R0 122 aa16.97■□□□□ 0.31
VPS28-205ENST00000526204 RUSC1-AS1Q66K80 236 aa16.97■□□□□ 0.31
VPS28-205ENST00000526204 TOMM20LQ6UXN7 152 aa16.97■□□□□ 0.31
VPS28-205ENST00000526204 TEX43Q6ZNM6 134 aa16.97■□□□□ 0.31
VPS28-205ENST00000526204 LINC01560Q8TB33 94 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms