RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 MYOZ3Q8TDC0 251 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 PMCHL2Q9BQD1 86 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 PCNX3Q9H6A9 2034 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 MUC22E2RYF6 1773 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 J3KRW8 73 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 LINC00614P0C842 121 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 COA6Q5JTJ3 125 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 LINC00479Q96M42 142 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 S4R3C0 116 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 TRAV30A0A087WSZ9 112 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 FAM181BA6NEQ2 426 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 IGKV1-16P04430 117 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 PRB3Q04118 309 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 Q6ZPA2 131 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 NUP35Q8NFH5 326 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 LPAR2Q9HBW0 351 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 OTORQ9NRC9 128 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 FBXL7Q9UJT9 491 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 RPL7P18124 248 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 PSG9Q00887 426 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 RELQ04864 619 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 UNQ6494/PRO21346Q6UXR6 183 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 ATP5L2Q7Z4Y8 100 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 A0A1W2PS18 150 aa6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 FNDC10F2Z333 226 aa6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 RNASE2P10153 161 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 MRPL52Q86TS9 123 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 MUC21A0A0G2JKD1 596 aa6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 MUC21A0A140T8X8 626 aa6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 WNT2P09544 360 aa6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 RPS20P60866 119 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 MUC21Q5SSG8 566 aa6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 SPANXN1Q5VSR9 72 aa6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 RASL11AQ6T310 242 aa6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 PRELID3AQ96N28 172 aa6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 ALKBH7Q9BT30 221 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 MAP1LC3AQ9H492 121 aa6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 PEF1Q9UBV8 284 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 C15orf65H3BRN8 121 aa6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 CDX4O14627 284 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 TMEM14BQ9NUH8 114 aa6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 IGHG3P01860 377 aa6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 RPL15P61313 204 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 GAFA1Q96PS6 74 aa6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 F11RQ9Y624 299 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-216ENST00000512820 IGHV3-35A0A0C4DH35 117 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 GCSHP23434 173 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 ODF3L1Q8IXM7 274 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 ZNF414Q96IQ9 312 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 V9GYV3 84 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 FBLL1A6NHQ2 334 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 H0YJW9 148 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 FABP2P12104 132 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 VWC2Q2TAL6 325 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 SAPCD1Q5SSQ6 148 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 UNQ5815/PRO19632Q6UWF5 114 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 ZNF788Q6ZQV5 615 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 SLC25A48Q6ZT89 311 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 FAM57AQ8TBR7 257 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 MRPL27Q9P0M9 148 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 A1L4Q6 167 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 CGB1A6NKQ9 187 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 F5H697 171 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 ITGB1BP1O14713 200 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 NPPCP23582 126 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 ZNF134P52741 427 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 FBLN7Q53RD9 439 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 TMEM167AQ8TBQ9 72 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 CHCHD1Q96BP2 118 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 ZNRD1Q9P1U0 126 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 RABAC1Q9UI14 185 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 PCDH15Q96QU1 1955 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 PCNTO95613 3336 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 B9A039 149 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 TMEM200BQ69YZ2 307 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 PPP1R27Q86WC6 154 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 TMEM133Q9H2Q1 129 aa6.87□□□□□ -1.31
LIMCH1-216ENST00000512820 CEP350Q5VT06 3117 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 PRSS8Q16651 343 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 TMEM78Q5T7P6 136 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 C8orf46Q8TAG6 207 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 NEUROG1Q92886 237 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 HEATR1Q9H583 2144 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 DOCK10Q96BY6 2186 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 A0A1B0GW15 77 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 IGLV2-14P01704 120 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 TMEM249Q2WGJ8 235 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 CIARTQ8N365 385 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 ST20Q9HBF5 79 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 SPTBN2O15020 2390 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 GGTLC3B5MD39 225 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 PRB4P10163 310 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 APOBEC3AP31941 199 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 GPR183P32249 361 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 Q6AWC8 147 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 SCGB1D4Q6XE38 83 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 C18orf15Q96N68 181 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 SCGB1C2P0DMR2 95 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 TSPOP30536 169 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 SRSF6Q13247 344 aaKnown RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms