RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 ZNF600Q6ZNG1 722 aa8.69□□□□□ -1.02
LIMCH1-210ENST00000509454 OR1S2Q8NGQ3 325 aa8.69□□□□□ -1.02
LIMCH1-210ENST00000509454 DAZ1Q9NQZ3 744 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-210ENST00000509454 MGAT4CQ9UBM8 478 aa8.69□□□□□ -1.02
LIMCH1-210ENST00000509454 ZNF256Q9Y2P7 627 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-210ENST00000509454 PUS1Q9Y606 427 aaKnown RBP eCLIP8.69□□□□□ -1.02
LIMCH1-210ENST00000509454 IGHV3-49A0A0A0MS15 119 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 TMEM213A2RRL7 107 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 ZFP92A6NM28 416 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 A8MWP6 167 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 LCE2BO14633 110 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 METTL15P1P0C7V9 234 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 CBLN1P23435 193 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 CAV2P51636 162 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 AKR1C1Q04828 323 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 RAB32Q13637 225 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 GUCA2BQ16661 112 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 LRRC37A5PQ49AS3 106 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 DEFB121Q5J5C9 76 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 LCN12Q6JVE5 192 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 MRAPQ8TCY5 172 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 GINS3Q9BRX5 216 aa8.68□□□□□ -1.02
LIMCH1-210ENST00000509454 WIPF1O43516 503 aa8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 TSC22D2O75157 780 aa8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 IGLV1-51P01701 117 aa8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 RLN2P04090 185 aa8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 ELLP55199 621 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 TAS2R30P59541 319 aa8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 RRAS2P62070 204 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 GAMTQ14353 236 aa8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 CD300EQ496F6 205 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 BTNL8Q6UX41 500 aa8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 TOMM20LQ6UXN7 152 aa8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 TMEM116Q8NCL8 245 aa8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 MARC2Q969Z3 335 aa8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 MED28Q9H204 178 aa8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 TECRQ9NZ01 308 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 MRPL27Q9P0M9 148 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-210ENST00000509454 IGHV3OR16-13A0A075B7E8 117 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 TRAV14DV4A0A0A6YYC5 116 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 IGHV3-74A0A0B4J1X5 117 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 WI2-2373I1.2A0A1W2PRP0 233 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 C7orf66A4D0T2 115 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 CCNKO75909 580 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 IGKV1-17P01599 117 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 IGLC1P0CG04 106 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 GP9P14770 177 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 PAX9P55771 341 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 CYCSP99999 105 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 ADAMTSL5Q6ZMM2 481 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 RBPMS2Q6ZRY4 209 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 ACOT7LQ6ZUV0 252 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 OR10P1Q8NGE3 313 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 Q8WTZ3 238 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 SIGLEC8Q9NYZ4 499 aa8.66□□□□□ -1.02
LIMCH1-210ENST00000509454 IZUMO1RA6ND01 250 aa8.65□□□□□ -1.02
LIMCH1-210ENST00000509454 FABP1P07148 127 aa8.65□□□□□ -1.02
LIMCH1-210ENST00000509454 RD3LP0DJH9 198 aa8.65□□□□□ -1.02
LIMCH1-210ENST00000509454 OR2F1Q13607 317 aa8.65□□□□□ -1.02
LIMCH1-210ENST00000509454 DEFB114Q30KQ6 69 aa8.65□□□□□ -1.02
LIMCH1-210ENST00000509454 NARS2Q96I59 477 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-210ENST00000509454 METTL26Q96S19 204 aa8.65□□□□□ -1.02
LIMCH1-210ENST00000509454 NMES1Q9C002 83 aa8.65□□□□□ -1.02
LIMCH1-210ENST00000509454 MLXQ9UH92 298 aa8.65□□□□□ -1.02
LIMCH1-210ENST00000509454 SORL1Q92673 2214 aa8.65□□□□□ -1.02
LIMCH1-210ENST00000509454 IGHV3-66A0A0C4DH42 116 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 IGHV7-4-1A0A0J9YVY3 117 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 FAM24AA6NFZ4 105 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 K7EMT4 169 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 SCAF4O95104 1147 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 IL4P05112 153 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 NPPCP23582 126 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 BMI1P35226 326 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 H2BFSP57053 126 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 YPEL3P61236 119 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 PRR20EP86478 221 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 PRR20CP86479 221 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 PRR20DP86480 221 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 PRR20BP86481 221 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 PRR20AP86496 221 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 TMEM14EPQ6UXP3 125 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 TMEM217Q8N7C4 229 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 OR2K2Q8NGT1 345 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 PBDC1Q9BVG4 233 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 RHPN1-AS1Q9BWJ2 59 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 K7EIL1 84 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 DEDDO75618 318 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 CST7O76096 145 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 TOMM40O96008 361 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 LYZP61626 148 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 RPL11P62913 178 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 ZNF90Q03938 601 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 FCN2Q15485 313 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 LAMTOR1Q6IAA8 161 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 GTSCR1Q86UQ5 136 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 STX12Q86Y82 276 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 LILRB2Q8N423 598 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 WDR89Q96FK6 387 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 ZFAND3Q9H8U3 227 aa8.64□□□□□ -1.03
LIMCH1-210ENST00000509454 SMPXQ9UHP9 88 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms