RNA–Protein interactions for RNA: ENST00000507784.5

RNF4-209, Transcript of ring finger protein 4, human

TSL 2

Gene RNF4, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-209	ENST00000507784	GNB4	Q9HAV0	340 aa		13.57	□□□□□ -0.24
RNF4-209	ENST00000507784	LSM4	Q9Y4Z0	139 aa	Known RBP	13.57	□□□□□ -0.24
RNF4-209	ENST00000507784	RNF114	Q9Y508	228 aa		13.57	□□□□□ -0.24
RNF4-209	ENST00000507784	NSD1	Q96L73	2696 aa	Predicted RBP	13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	IGKV1D-37	A0A075B6S9	117 aa		13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	TCRBV4S1A1T	A0A5B7	111 aa		13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	CLPSL1	A2RUU4	121 aa		13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	ANKRD34B	A5PLL1	514 aa		13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	SCGB2A1	O75556	95 aa		13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	CLEC3B	P05452	202 aa		13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	GPR183	P32249	361 aa		13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	ELL	P55199	621 aa	Predicted RBP	13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	IFITM2	Q01629	132 aa		13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	MIC13	Q5XKP0	118 aa		13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	OR4X2	Q8NGF9	303 aa		13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	OR5B12	Q96R08	314 aa		13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	TRGV9	Q99603	122 aa		13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	GGTLC1	Q9BX51	225 aa		13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	TIMM9	Q9Y5J7	89 aa		13.56	□□□□□ -0.24
RNF4-209	ENST00000507784	IFNA7	P01567	189 aa		13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	SEC11B	P0C7V7	166 aa		13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	SPP1	P10451	314 aa		13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	GATA2	P23769	480 aa	Predicted RBP	13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	ZNF90	Q03938	601 aa		13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	KHDC1L	Q5JSQ8	128 aa		13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	FFAR4	Q5NUL3	377 aa		13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	ZNF491	Q8N8L2	437 aa		13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	ZNF680	Q8NEM1	530 aa		13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	BPIFC	Q8NFQ6	507 aa		13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	PHYHIPL	Q96FC7	376 aa		13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	PSMG3	Q9BT73	122 aa	Predicted RBP	13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	KCNIP2	Q9NS61	270 aa		13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	GAR1	Q9NY12	217 aa	Known RBP	13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	SLC45A2	Q9UMX9	530 aa		13.55	□□□□□ -0.24
RNF4-209	ENST00000507784	PXMP4	Q9Y6I8	212 aa		13.55	□□□□□ -0.24
RNF4-209	ENST00000507784		F8W735	103 aa	Predicted RBP	13.54	□□□□□ -0.24
RNF4-209	ENST00000507784	NUPL2	O15504	423 aa	Known RBP	13.54	□□□□□ -0.24
RNF4-209	ENST00000507784	FABP1	P07148	127 aa		13.54	□□□□□ -0.24
RNF4-209	ENST00000507784	IGLC1	P0CG04	106 aa		13.54	□□□□□ -0.24
RNF4-209	ENST00000507784	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	13.54	□□□□□ -0.24
RNF4-209	ENST00000507784	CCDC140	Q96MF4	163 aa		13.54	□□□□□ -0.24
RNF4-209	ENST00000507784	UBQLN2	Q9UHD9	624 aa		13.54	□□□□□ -0.24
RNF4-209	ENST00000507784	PPP5D1	E7EU14	171 aa		13.53	□□□□□ -0.24
RNF4-209	ENST00000507784	TSPAN15	O95858	294 aa		13.53	□□□□□ -0.24
RNF4-209	ENST00000507784	FCGR2B	P31994	310 aa	Predicted RBP	13.53	□□□□□ -0.24
RNF4-209	ENST00000507784	ARL3	P36405	182 aa		13.53	□□□□□ -0.24
RNF4-209	ENST00000507784	RPL29	P47914	159 aa	Known RBP	13.53	□□□□□ -0.24
RNF4-209	ENST00000507784	B2M	P61769	119 aa		13.53	□□□□□ -0.24
RNF4-209	ENST00000507784	ZNF616	Q08AN1	781 aa		13.53	□□□□□ -0.24
RNF4-209	ENST00000507784	KIAA0141	Q14154	515 aa	Predicted RBP	13.53	□□□□□ -0.24
RNF4-209	ENST00000507784	FAM74A1	Q5RGS3	127 aa		13.53	□□□□□ -0.24
RNF4-209	ENST00000507784	AKR1C8P	Q5T2L2	129 aa		13.53	□□□□□ -0.24
RNF4-209	ENST00000507784	STPG3	Q8N7X2	389 aa		13.53	□□□□□ -0.24
RNF4-209	ENST00000507784	C11orf44	Q8N8P7	122 aa		13.53	□□□□□ -0.24
RNF4-209	ENST00000507784	SLC39A9	Q9NUM3	307 aa		13.53	□□□□□ -0.24
RNF4-209	ENST00000507784	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	13.52	□□□□□ -0.25
RNF4-209	ENST00000507784	TGOLN2	O43493	480 aa		13.52	□□□□□ -0.25
RNF4-209	ENST00000507784	CTSG	P08311	255 aa		13.52	□□□□□ -0.25
RNF4-209	ENST00000507784	RD3L	P0DJH9	198 aa		13.52	□□□□□ -0.25
RNF4-209	ENST00000507784	CD28	P10747	220 aa		13.52	□□□□□ -0.25
RNF4-209	ENST00000507784	SELENOT	P62341	195 aa		13.52	□□□□□ -0.25
RNF4-209	ENST00000507784	SERF2	P84101	59 aa		13.52	□□□□□ -0.25
RNF4-209	ENST00000507784	ACOT6	Q3I5F7	207 aa	Predicted RBP	13.52	□□□□□ -0.25
RNF4-209	ENST00000507784	ZNF343	Q6P1L6	599 aa		13.52	□□□□□ -0.25
RNF4-209	ENST00000507784		Q6ZRG5	221 aa		13.52	□□□□□ -0.25
RNF4-209	ENST00000507784		Q8WTZ3	238 aa		13.52	□□□□□ -0.25
RNF4-209	ENST00000507784	CHRDL1	Q9BU40	450 aa		13.52	□□□□□ -0.25
RNF4-209	ENST00000507784	PLA2G2E	Q9NZK7	142 aa		13.52	□□□□□ -0.25
RNF4-209	ENST00000507784	IGKV1-17	P01599	117 aa		13.51	□□□□□ -0.25
RNF4-209	ENST00000507784	LINC00869	P0C866	280 aa		13.51	□□□□□ -0.25
RNF4-209	ENST00000507784	PSG1	P11464	419 aa		13.51	□□□□□ -0.25
RNF4-209	ENST00000507784	TCTEX1D4	Q5JR98	221 aa		13.51	□□□□□ -0.25
RNF4-209	ENST00000507784	HIST2H2BD	Q6DRA6	164 aa		13.51	□□□□□ -0.25
RNF4-209	ENST00000507784	ZNF767P	Q75MW2	155 aa		13.51	□□□□□ -0.25
RNF4-209	ENST00000507784	RNF152	Q8N8N0	203 aa		13.51	□□□□□ -0.25
RNF4-209	ENST00000507784	UBE2E2	Q96LR5	201 aa		13.51	□□□□□ -0.25
RNF4-209	ENST00000507784	VSIR	Q9H7M9	311 aa		13.51	□□□□□ -0.25
RNF4-209	ENST00000507784	PEF1	Q9UBV8	284 aa	Known RBP	13.51	□□□□□ -0.25
RNF4-209	ENST00000507784	IGHV3-35	A0A0C4DH35	117 aa		13.5	□□□□□ -0.25
RNF4-209	ENST00000507784	TOMM40	O96008	361 aa		13.5	□□□□□ -0.25
RNF4-209	ENST00000507784	TRBV12-3	P01733	135 aa		13.5	□□□□□ -0.25
RNF4-209	ENST00000507784	ADM	P35318	185 aa		13.5	□□□□□ -0.25
RNF4-209	ENST00000507784	PROK1	P58294	105 aa		13.5	□□□□□ -0.25
RNF4-209	ENST00000507784	YPEL3	P61236	119 aa	Predicted RBP	13.5	□□□□□ -0.25
RNF4-209	ENST00000507784	PRR20E	P86478	221 aa		13.5	□□□□□ -0.25
RNF4-209	ENST00000507784	PRR20C	P86479	221 aa		13.5	□□□□□ -0.25
RNF4-209	ENST00000507784	PRR20D	P86480	221 aa		13.5	□□□□□ -0.25
RNF4-209	ENST00000507784	PRR20B	P86481	221 aa		13.5	□□□□□ -0.25
RNF4-209	ENST00000507784	PRR20A	P86496	221 aa		13.5	□□□□□ -0.25
RNF4-209	ENST00000507784	SPSB3	Q6PJ21	355 aa		13.5	□□□□□ -0.25
RNF4-209	ENST00000507784	MYOZ3	Q8TDC0	251 aa		13.5	□□□□□ -0.25
RNF4-209	ENST00000507784	ATP6V0B	Q99437	205 aa		13.5	□□□□□ -0.25
RNF4-209	ENST00000507784	DOK5	Q9P104	306 aa		13.5	□□□□□ -0.25
RNF4-209	ENST00000507784		A0A1B0GUS0	222 aa		13.49	□□□□□ -0.25
RNF4-209	ENST00000507784	NUDT19	A8MXV4	375 aa		13.49	□□□□□ -0.25
RNF4-209	ENST00000507784	YIF1A	O95070	293 aa		13.49	□□□□□ -0.25
RNF4-209	ENST00000507784	MB	P02144	154 aa		13.49	□□□□□ -0.25
RNF4-209	ENST00000507784	LGALS1	P09382	135 aa	Known RBP	13.49	□□□□□ -0.25
RNF4-209	ENST00000507784	ORM2	P19652	201 aa		13.49	□□□□□ -0.25
RNF4-209	ENST00000507784	SULT1A2	P50226	295 aa		13.49	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms