RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 CSMD3Q7Z407 3707 aa9.38□□□□□ -0.91
PTPRF-214ENST00000496043 ANXA3P12429 323 aa9.38□□□□□ -0.91
PTPRF-214ENST00000496043 FAUP35544 74 aaKnown RBP9.38□□□□□ -0.91
PTPRF-214ENST00000496043 CCR6P51684 374 aa9.38□□□□□ -0.91
PTPRF-214ENST00000496043 DEFB131AP59861 70 aa9.38□□□□□ -0.91
PTPRF-214ENST00000496043 YPEL3P61236 119 aaPredicted RBP9.38□□□□□ -0.91
PTPRF-214ENST00000496043 PRSS54Q6PEW0 395 aa9.38□□□□□ -0.91
PTPRF-214ENST00000496043 SLC24A4Q8NFF2 622 aa9.38□□□□□ -0.91
PTPRF-214ENST00000496043 OR1S2Q8NGQ3 325 aa9.38□□□□□ -0.91
PTPRF-214ENST00000496043 GRAMD2BQ96HH9 432 aa9.38□□□□□ -0.91
PTPRF-214ENST00000496043 RARRES2Q99969 163 aa9.38□□□□□ -0.91
PTPRF-214ENST00000496043 U3KQ87 197 aa9.38□□□□□ -0.91
PTPRF-214ENST00000496043 A0A0B4J2A0 478 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 PIGBOS1A0A0B4J2F0 54 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 IFNA10P01566 189 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 NPY1RP25929 384 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 OR10J1P30954 320 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 P2RY1P47900 373 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 EIF2B2P49770 351 aaKnown RBP9.37□□□□□ -0.91
PTPRF-214ENST00000496043 RND2P52198 227 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 AP3S2P59780 193 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 SRPXP78539 464 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 EWSR1Q01844 656 aaKnown RBP eCLIP9.37□□□□□ -0.91
PTPRF-214ENST00000496043 PMS2P11Q13670 270 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 SMCO1Q147U7 214 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 PYDC2Q56P42 97 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 NMSQ5H8A3 153 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 CEMP1Q6PRD7 247 aaPredicted RBP9.37□□□□□ -0.91
PTPRF-214ENST00000496043 LYZL2Q7Z4W2 148 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 LGI3Q8N145 548 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 NPIPB3Q92617 1050 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 PRR13Q9NZ81 148 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 SHPKQ9UHJ6 478 aa9.37□□□□□ -0.91
PTPRF-214ENST00000496043 NUPR2A6NF83 97 aa9.36□□□□□ -0.91
PTPRF-214ENST00000496043 NXPH3O95157 252 aa9.36□□□□□ -0.91
PTPRF-214ENST00000496043 IGLC1P0CG04 106 aa9.36□□□□□ -0.91
PTPRF-214ENST00000496043 AP2S1P53680 142 aaPredicted RBP9.36□□□□□ -0.91
PTPRF-214ENST00000496043 ATP5IP56385 69 aaPredicted RBP9.36□□□□□ -0.91
PTPRF-214ENST00000496043 SUPT4H1P63272 117 aaKnown RBP9.36□□□□□ -0.91
PTPRF-214ENST00000496043 RBMS2Q15434 407 aaKnown RBP9.36□□□□□ -0.91
PTPRF-214ENST00000496043 LEMD1Q68G75 181 aa9.36□□□□□ -0.91
PTPRF-214ENST00000496043 STHQ8IWL8 128 aa9.36□□□□□ -0.91
PTPRF-214ENST00000496043 TOMM5Q8N4H5 51 aa9.36□□□□□ -0.91
PTPRF-214ENST00000496043 STXBP6Q8NFX7 210 aa9.36□□□□□ -0.91
PTPRF-214ENST00000496043 KLK5Q9Y337 293 aaPredicted RBP9.36□□□□□ -0.91
PTPRF-214ENST00000496043 U3KQE9 123 aa9.36□□□□□ -0.91
PTPRF-214ENST00000496043 DNAH1Q9P2D7 4330 aa9.35□□□□□ -0.91
PTPRF-214ENST00000496043 HELTA6NFD8 242 aa9.35□□□□□ -0.91
PTPRF-214ENST00000496043 CCDC160A6NGH7 325 aa9.35□□□□□ -0.91
PTPRF-214ENST00000496043 K7EQG2 157 aa9.35□□□□□ -0.91
PTPRF-214ENST00000496043 CA1P00915 261 aaPredicted RBP9.35□□□□□ -0.91
PTPRF-214ENST00000496043 HNRNPCP07910 306 aaKnown RBP eCLIP9.35□□□□□ -0.91
PTPRF-214ENST00000496043 RD3LP0DJH9 198 aa9.35□□□□□ -0.91
PTPRF-214ENST00000496043 S100A5P33763 92 aa9.35□□□□□ -0.91
PTPRF-214ENST00000496043 FAM24BQ8N5W8 94 aa9.35□□□□□ -0.91
PTPRF-214ENST00000496043 OR11H2Q8NH07 326 aa9.35□□□□□ -0.91
PTPRF-214ENST00000496043 OR1S1Q8NH92 325 aa9.35□□□□□ -0.91
PTPRF-214ENST00000496043 DTD1Q8TEA8 209 aa9.35□□□□□ -0.91
PTPRF-214ENST00000496043 TMEM170AQ8WVE7 144 aa9.35□□□□□ -0.91
PTPRF-214ENST00000496043 ACY3Q96HD9 319 aa9.35□□□□□ -0.91
PTPRF-214ENST00000496043 RBKSQ9H477 322 aa9.35□□□□□ -0.91
PTPRF-214ENST00000496043 HSPB7Q9UBY9 170 aa9.35□□□□□ -0.91
PTPRF-214ENST00000496043 IFNA4P05014 189 aa9.34□□□□□ -0.91
PTPRF-214ENST00000496043 DHRS2Q13268 280 aa9.34□□□□□ -0.91
PTPRF-214ENST00000496043 KLF9Q13886 244 aaPredicted RBP9.34□□□□□ -0.91
PTPRF-214ENST00000496043 TMEM128Q5BJH2 165 aa9.34□□□□□ -0.91
PTPRF-214ENST00000496043 C16orf54Q6UWD8 224 aa9.34□□□□□ -0.91
PTPRF-214ENST00000496043 DUXBA0A1W2PPF3 345 aa9.33□□□□□ -0.92
PTPRF-214ENST00000496043 TOMM40O96008 361 aa9.33□□□□□ -0.92
PTPRF-214ENST00000496043 IL4P05112 153 aa9.33□□□□□ -0.92
PTPRF-214ENST00000496043 GPX4P36969 197 aaPredicted RBP9.33□□□□□ -0.92
PTPRF-214ENST00000496043 TMEM41BQ5BJD5 291 aa9.33□□□□□ -0.92
PTPRF-214ENST00000496043 TMED4Q7Z7H5 227 aa9.33□□□□□ -0.92
PTPRF-214ENST00000496043 DCANP1Q8TF63 244 aa9.33□□□□□ -0.92
PTPRF-214ENST00000496043 DEDD2Q8WXF8 326 aa9.33□□□□□ -0.92
PTPRF-214ENST00000496043 SLC25A21Q9BQT8 299 aaPredicted RBP9.33□□□□□ -0.92
PTPRF-214ENST00000496043 PFDN2Q9UHV9 154 aa9.33□□□□□ -0.92
PTPRF-214ENST00000496043 LYSTQ99698 3801 aa9.33□□□□□ -0.92
PTPRF-214ENST00000496043 LY6G6CO95867 125 aa9.32□□□□□ -0.92
PTPRF-214ENST00000496043 ZNF688P0C7X2 276 aa9.32□□□□□ -0.92
PTPRF-214ENST00000496043 PSG1P11464 419 aa9.32□□□□□ -0.92
PTPRF-214ENST00000496043 USF2Q15853 346 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-214ENST00000496043 MORN3Q6PF18 240 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-214ENST00000496043 C11orf45Q8TAV5 145 aa9.32□□□□□ -0.92
PTPRF-214ENST00000496043 PHLDA1Q8WV24 401 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-214ENST00000496043 GLMPQ8WWB7 406 aa9.32□□□□□ -0.92
PTPRF-214ENST00000496043 TRIM63Q969Q1 353 aa9.32□□□□□ -0.92
PTPRF-214ENST00000496043 KNCNA6PVL3 124 aa9.31□□□□□ -0.92
PTPRF-214ENST00000496043 BUB3O43684 328 aa9.31□□□□□ -0.92
PTPRF-214ENST00000496043 PITX3O75364 302 aa9.31□□□□□ -0.92
PTPRF-214ENST00000496043 SPP1P10451 314 aa9.31□□□□□ -0.92
PTPRF-214ENST00000496043 SLC25A6P12236 298 aa9.31□□□□□ -0.92
PTPRF-214ENST00000496043 VAMP1P23763 118 aa9.31□□□□□ -0.92
PTPRF-214ENST00000496043 RAB11AP62491 216 aa9.31□□□□□ -0.92
PTPRF-214ENST00000496043 GAMTQ14353 236 aa9.31□□□□□ -0.92
PTPRF-214ENST00000496043 TRPT1Q86TN4 253 aaKnown RBP9.31□□□□□ -0.92
PTPRF-214ENST00000496043 CCDC190Q86UF4 302 aa9.31□□□□□ -0.92
PTPRF-214ENST00000496043 LRTM2Q8N967 370 aa9.31□□□□□ -0.92
PTPRF-214ENST00000496043 OR51G1Q8NGK1 321 aa9.31□□□□□ -0.92
PTPRF-214ENST00000496043 LINC00476Q8WZB0 136 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms