RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 SSSCA1O60232 199 aa12.28□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 PRAF2O60831 178 aa12.28□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 IGKV1-17P01599 117 aa12.28□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 IGLC1P0CG04 106 aa12.28□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 OR10J1P30954 320 aa12.28□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 GPX4P36969 197 aaPredicted RBP12.28□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 SPANXN5Q5MJ07 72 aa12.28□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 TOMM20LQ6UXN7 152 aa12.28□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 SLC35E1Q96K37 410 aa12.28□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 ZFAND3Q9H8U3 227 aa12.28□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 STRAPQ9Y3F4 350 aaKnown RBP12.28□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 SMAD5-AS1Q9Y6J3 95 aa12.28□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 PRKDCP78527 4128 aaKnown RBP12.27□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 IGHV7-4-1A0A0J9YVY3 117 aa12.27□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 GUCA2BQ16661 112 aa12.27□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 GTSCR1Q86UQ5 136 aa12.27□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 TMEM61Q8N0U2 210 aa12.27□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 WDR89Q96FK6 387 aaPredicted RBP12.27□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 MARVELD1Q9BSK0 173 aa12.27□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 PSENENQ9NZ42 101 aa12.27□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 SMPXQ9UHP9 88 aa12.27□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 TRAV14DV4A0A0A6YYC5 116 aa12.26□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 TRAV25A0A0B4J276 109 aa12.26□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 ZNF785A8K8V0 405 aa12.26□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 SNRPGP15A8MWD9 76 aa12.26□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 MBPP02686 304 aaPredicted RBP12.26□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 YPEL3P61236 119 aaPredicted RBP12.26□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 GSG1LQ6UXU4 331 aa12.26□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 Q8N1Y9 231 aa12.26□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 SMIM8Q96KF7 97 aa12.26□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 C2orf50Q96LR7 162 aa12.26□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 RAB40CQ96S21 281 aa12.26□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 RCL1Q9Y2P8 373 aaKnown RBP12.26□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 PRSS46E5RG02 174 aa12.25□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 SCAF4O95104 1147 aaKnown RBP12.25□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 BMI1P35226 326 aa12.25□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 GAMTQ14353 236 aa12.25□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 RBPMS2Q6ZRY4 209 aaKnown RBP12.25□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 Q8WTZ3 238 aa12.25□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 B9D2Q9BPU9 175 aa12.25□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 RHPN1-AS1Q9BWJ2 59 aa12.25□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 IGHV3-49A0A0A0MS15 119 aa12.24□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 CHEK1O14757 476 aa12.24□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 PAX9P55771 341 aa12.24□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 TAS2R30P59541 319 aa12.24□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 CD81P60033 236 aa12.24□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 LAMTOR1Q6IAA8 161 aa12.24□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 SORL1Q92673 2214 aa12.24□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 ZFP92A6NM28 416 aa12.23□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 K7EPK0 472 aa12.23□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 TSC22D2O75157 780 aa12.23□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 PTTG1O95997 202 aa12.23□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 TOMM40O96008 361 aa12.23□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 METTL26Q96S19 204 aa12.23□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 RNF2Q99496 336 aa12.23□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 NEURL2Q9BR09 285 aa12.23□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 LSM5Q9Y4Y9 91 aaKnown RBP12.23□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 IGKV1D-37A0A075B6S9 117 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 IGHV3OR16-13A0A075B7E8 117 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 IGHV3-74A0A0B4J1X5 117 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 L7N2F9 121 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 GOSR2O14653 212 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 TSPAN4O14817 238 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 CD7P09564 240 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 RD3LP0DJH9 198 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 IGHV4-30-4P0DP06 118 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 NPPCP23582 126 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 VAMP2P63027 116 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 OR8G2PQ6IF36 304 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 TMEM14EPQ6UXP3 125 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 ACOT7LQ6ZUV0 252 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 ST8SIA2Q92186 375 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 SPAG8Q99932 426 aaPredicted RBP12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 TMEM231Q9H6L2 316 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 VSIRQ9H7M9 311 aa12.22□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 C7orf66A4D0T2 115 aa12.21□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 PMS2P5A8MQ11 134 aa12.21□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 APOHP02749 345 aaPredicted RBP12.21□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 IL4P05112 153 aa12.21□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 FABP1P07148 127 aa12.21□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 METTL15P1P0C7V9 234 aa12.21□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 CRYBB3P26998 211 aa12.21□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 S100A10P60903 97 aa12.21□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 THAP8Q8NA92 274 aa12.21□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 NARS2Q96I59 477 aaKnown RBP12.21□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 TRGV9Q99603 122 aa12.21□□□□□ -0.45
MSH5-SAPCD1-206ENST00000491552 IGHV3-66A0A0C4DH42 116 aa12.2□□□□□ -0.46
MSH5-SAPCD1-206ENST00000491552 A0A1W2PS18 150 aa12.2□□□□□ -0.46
MSH5-SAPCD1-206ENST00000491552 A8MZ25 164 aa12.2□□□□□ -0.46
MSH5-SAPCD1-206ENST00000491552 CCNKO75909 580 aa12.2□□□□□ -0.46
MSH5-SAPCD1-206ENST00000491552 SIX6O95475 246 aa12.2□□□□□ -0.46
MSH5-SAPCD1-206ENST00000491552 HNRNPCP07910 306 aaKnown RBP eCLIP12.2□□□□□ -0.46
MSH5-SAPCD1-206ENST00000491552 FRMD6-AS1P0C7T7 363 aa12.2□□□□□ -0.46
MSH5-SAPCD1-206ENST00000491552 PSG1P11464 419 aa12.2□□□□□ -0.46
MSH5-SAPCD1-206ENST00000491552 ZNF90Q03938 601 aa12.2□□□□□ -0.46
MSH5-SAPCD1-206ENST00000491552 AKR1C1Q04828 323 aa12.2□□□□□ -0.46
MSH5-SAPCD1-206ENST00000491552 IL15RAQ13261 267 aa12.2□□□□□ -0.46
MSH5-SAPCD1-206ENST00000491552 RAB32Q13637 225 aa12.2□□□□□ -0.46
MSH5-SAPCD1-206ENST00000491552 OR10P1Q8NGE3 313 aa12.2□□□□□ -0.46
MSH5-SAPCD1-206ENST00000491552 OR51G1Q8NGK1 321 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms