RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 GUK1Q16774 197 aa12.51□□□□□ -0.41
SYNE1-227ENST00000489156 RAB24Q969Q5 203 aa12.51□□□□□ -0.41
SYNE1-227ENST00000489156 MAP1LC3BQ9GZQ8 125 aa12.51□□□□□ -0.41
SYNE1-227ENST00000489156 A0A1W2PPV4 95 aa12.5□□□□□ -0.41
SYNE1-227ENST00000489156 TMEM218A2RU14 115 aa12.5□□□□□ -0.41
SYNE1-227ENST00000489156 TCF21O43680 179 aa12.5□□□□□ -0.41
SYNE1-227ENST00000489156 LINC00869P0C866 280 aa12.5□□□□□ -0.41
SYNE1-227ENST00000489156 CDC34P49427 236 aaPredicted RBP12.5□□□□□ -0.41
SYNE1-227ENST00000489156 RND2P52198 227 aa12.5□□□□□ -0.41
SYNE1-227ENST00000489156 CCL20P78556 96 aa12.5□□□□□ -0.41
SYNE1-227ENST00000489156 SRSF3P84103 164 aaKnown RBP12.5□□□□□ -0.41
SYNE1-227ENST00000489156 SRSF2Q01130 221 aaKnown RBP12.5□□□□□ -0.41
SYNE1-227ENST00000489156 LCN15Q6UWW0 184 aa12.5□□□□□ -0.41
SYNE1-227ENST00000489156 HSPB9Q9BQS6 159 aa12.5□□□□□ -0.41
SYNE1-227ENST00000489156 EIF5A2Q9GZV4 153 aaKnown RBP12.5□□□□□ -0.41
SYNE1-227ENST00000489156 TREM1Q9NP99 234 aa12.5□□□□□ -0.41
SYNE1-227ENST00000489156 THYN1Q9P016 225 aa12.5□□□□□ -0.41
SYNE1-227ENST00000489156 TCRBV4S1A1TA0A5B7 111 aa12.49□□□□□ -0.41
SYNE1-227ENST00000489156 AKIRIN2Q53H80 203 aa12.49□□□□□ -0.41
SYNE1-227ENST00000489156 CYP2G1PQ6ZSU1 146 aa12.49□□□□□ -0.41
SYNE1-227ENST00000489156 SSX7Q7RTT5 188 aa12.49□□□□□ -0.41
SYNE1-227ENST00000489156 OR4X1Q8NH49 305 aa12.49□□□□□ -0.41
SYNE1-227ENST00000489156 NARS2Q96I59 477 aaKnown RBP12.49□□□□□ -0.41
SYNE1-227ENST00000489156 LINC00052Q96N35 136 aa12.49□□□□□ -0.41
SYNE1-227ENST00000489156 JMJD8Q96S16 334 aa12.49□□□□□ -0.41
SYNE1-227ENST00000489156 IGLV11-55A0A075B6I3 123 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 A0A1B0GV50 99 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 RBFOX3A6NFN3 312 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 ZFP92A6NM28 416 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 CLDN34H7C241 214 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 AMY1AP04745 511 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 KLK9Q2XQG4 91 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 FAM122CQ6P4D5 195 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 C19orf35Q6ZS72 473 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 LURAP1LQ8IV03 231 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 TRGV9Q99603 122 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 SLC25A22Q9H936 323 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 KLK9Q9UKQ9 250 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 IGKV1D-37A0A075B6S9 117 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 RHOBP62745 196 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 GCSAMLQ5JQS6 135 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 FANCD2OSQ96PS1 177 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 MRPL36Q9P0J6 103 aaKnown RBP12.48□□□□□ -0.41
SYNE1-227ENST00000489156 C2CD3Q4AC94 2353 aa12.48□□□□□ -0.41
SYNE1-227ENST00000489156 FAM181BA6NEQ2 426 aa12.47□□□□□ -0.41
SYNE1-227ENST00000489156 SH2D7A6NKC9 451 aaPredicted RBP12.47□□□□□ -0.41
SYNE1-227ENST00000489156 K7EIM0 57 aa12.47□□□□□ -0.41
SYNE1-227ENST00000489156 ATP6V0E1O15342 81 aa12.47□□□□□ -0.41
SYNE1-227ENST00000489156 RNASE1P07998 156 aaKnown RBP12.47□□□□□ -0.41
SYNE1-227ENST00000489156 HIST1H1BP16401 226 aaKnown RBP12.47□□□□□ -0.41
SYNE1-227ENST00000489156 CRIP2P52943 208 aaPredicted RBP12.47□□□□□ -0.41
SYNE1-227ENST00000489156 FAM110DQ8TAY7 271 aaPredicted RBP12.47□□□□□ -0.41
SYNE1-227ENST00000489156 IGHV3-48P01763 117 aa12.46□□□□□ -0.41
SYNE1-227ENST00000489156 TAGLN2P37802 199 aaKnown RBP12.46□□□□□ -0.41
SYNE1-227ENST00000489156 KHDC3LQ587J8 217 aa12.46□□□□□ -0.41
SYNE1-227ENST00000489156 UNQ5815/PRO19632Q6UWF5 114 aa12.46□□□□□ -0.41
SYNE1-227ENST00000489156 GATAD1Q8WUU5 269 aa12.46□□□□□ -0.41
SYNE1-227ENST00000489156 SEC11CQ9BY50 192 aa12.46□□□□□ -0.41
SYNE1-227ENST00000489156 TMEM231Q9H6L2 316 aa12.46□□□□□ -0.41
SYNE1-227ENST00000489156 IFNA1P01562 189 aa12.46□□□□□ -0.42
SYNE1-227ENST00000489156 PSMB3P49720 205 aa12.46□□□□□ -0.42
SYNE1-227ENST00000489156 FGF8P55075 233 aaPredicted RBP12.46□□□□□ -0.42
SYNE1-227ENST00000489156 BLCAPP62952 87 aa12.46□□□□□ -0.42
SYNE1-227ENST00000489156 ZNF506Q5JVG8 444 aa12.46□□□□□ -0.42
SYNE1-227ENST00000489156 C10orf91Q5T1B1 145 aa12.46□□□□□ -0.42
SYNE1-227ENST00000489156 RNF2Q99496 336 aa12.46□□□□□ -0.42
SYNE1-227ENST00000489156 CLN5O75503 358 aa12.45□□□□□ -0.42
SYNE1-227ENST00000489156 STAG3L2P0CL84 134 aa12.45□□□□□ -0.42
SYNE1-227ENST00000489156 STAG3L3P0CL85 134 aa12.45□□□□□ -0.42
SYNE1-227ENST00000489156 PPT1P50897 306 aa12.45□□□□□ -0.42
SYNE1-227ENST00000489156 SLC35E3Q7Z769 313 aa12.45□□□□□ -0.42
SYNE1-227ENST00000489156 OR5T1Q8NG75 326 aa12.45□□□□□ -0.42
SYNE1-227ENST00000489156 PFDN5Q99471 154 aa12.45□□□□□ -0.42
SYNE1-227ENST00000489156 SEPSECSQ9HD40 501 aaKnown RBP12.45□□□□□ -0.42
SYNE1-227ENST00000489156 GNG13Q9P2W3 67 aa12.45□□□□□ -0.42
SYNE1-227ENST00000489156 TRAV30A0A087WSZ9 112 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 IGHG2P01859 326 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 HSPB1P04792 205 aaKnown RBP12.44□□□□□ -0.42
SYNE1-227ENST00000489156 IGF1P05019 195 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 FABP1P07148 127 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 GATA2P23769 480 aaPredicted RBP12.44□□□□□ -0.42
SYNE1-227ENST00000489156 NPBWR1P48145 328 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 ZNF90Q03938 601 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 Q6ZS46 218 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 OR1L4Q8NGR5 311 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 RARRES2Q99969 163 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 SLC35B3Q9H1N7 401 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 DNAJC4Q9NNZ3 241 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 ELOA3CA0A087WX78 387 aaPredicted RBP12.44□□□□□ -0.42
SYNE1-227ENST00000489156 PSMB11A5LHX3 300 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 C9JQL5 133 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 CXorf1O96002 111 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 OR5G3P0C626 314 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 SFTA3P0C7M3 94 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 IGLC1P0CG04 106 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 BCL2P10415 239 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 HAGHQ16775 308 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 ECSCRQ19T08 205 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 FAM78BQ5VT40 261 aa12.44□□□□□ -0.42
SYNE1-227ENST00000489156 MRPL32Q9BYC8 188 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms