RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 ZNF407Q9C0G0 2248 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 TRBV20OR9-2A0A075B6H5 130 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 K7EP34 96 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 LPAL2Q16609 132 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 PRR31Q5SQ13 230 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 EBLN2Q6P2I7 272 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 LOC105371242A0A075B767 164 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 LOC102723996A0A087X1L8 192 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 PPIAL4CA0A0B4J2A2 164 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 ZNF785A8K8V0 405 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 IQCF6A8MYZ5 107 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 FNDC10F2Z333 226 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 PPIAL4GP0DN37 164 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 OSR1Q8TAX0 266 aaPredicted RBP12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 IFI27L1Q96BM0 104 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 ZNF479Q96JC4 524 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 FOXA2Q9Y261 457 aaPredicted RBP12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 ATRXP46100 2492 aa12.61□□□□□ -0.39
HLA-DQB1-209ENST00000487676 TRAV3A0A0B4J244 114 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 NDUFB8O95169 186 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 COX8AP10176 69 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 HERVK_113P61574 105 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 ZNF788Q6ZQV5 615 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 GGNQ86UU5 652 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 WFDC8Q8IUA0 241 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 Q9H3A6 140 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 ABCA7Q8IZY2 2146 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 LINC00205P59089 165 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 FAM231DQ6ZW35 169 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 ZNRF1Q8ND25 227 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 THSD7BQ9C0I4 1608 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 TMEM30BQ3MIR4 351 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 BCL6BQ8N143 479 aaPredicted RBP12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 LINC00479Q96M42 142 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 APELAP0DMC3 54 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 ZNF138P52744 262 aa12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 SLC25A48Q6ZT89 311 aaKnown RBP12.6□□□□□ -0.39
HLA-DQB1-209ENST00000487676 ICE1Q9Y2F5 2266 aa12.59□□□□□ -0.39
HLA-DQB1-209ENST00000487676 GAGE13Q4V321 117 aa12.59□□□□□ -0.39
HLA-DQB1-209ENST00000487676 OR4C13Q8NGP0 309 aa12.59□□□□□ -0.39
HLA-DQB1-209ENST00000487676 TMEM160Q9NX00 188 aa12.59□□□□□ -0.39
HLA-DQB1-209ENST00000487676 OR11H12B2RN74 326 aa12.59□□□□□ -0.39
HLA-DQB1-209ENST00000487676 TAX1BP3O14907 124 aa12.59□□□□□ -0.39
HLA-DQB1-209ENST00000487676 RPL13AP40429 203 aaKnown RBP12.59□□□□□ -0.39
HLA-DQB1-209ENST00000487676 RPRMLQ8N4K4 120 aa12.59□□□□□ -0.39
HLA-DQB1-209ENST00000487676 OR11H1Q8NG94 326 aa12.59□□□□□ -0.39
HLA-DQB1-209ENST00000487676 OR11H2Q8NH07 326 aa12.59□□□□□ -0.39
HLA-DQB1-209ENST00000487676 IGKV3D-15A0A087WSY6 115 aa12.58□□□□□ -0.39
HLA-DQB1-209ENST00000487676 SMAD7O15105 426 aaKnown RBP12.58□□□□□ -0.39
HLA-DQB1-209ENST00000487676 S100A4P26447 101 aaKnown RBP12.58□□□□□ -0.39
HLA-DQB1-209ENST00000487676 PSG3Q16557 428 aa12.58□□□□□ -0.39
HLA-DQB1-209ENST00000487676 VCX2Q9H322 139 aa12.58□□□□□ -0.39
HLA-DQB1-209ENST00000487676 FOXG1P55316 489 aaPredicted RBP12.58□□□□□ -0.4
HLA-DQB1-209ENST00000487676 TTC32Q5I0X7 151 aa12.58□□□□□ -0.4
HLA-DQB1-209ENST00000487676 IGHV1-24A0A0C4DH33 117 aa12.58□□□□□ -0.4
HLA-DQB1-209ENST00000487676 TCRBV4S1A1TA0A5B7 111 aa12.58□□□□□ -0.4
HLA-DQB1-209ENST00000487676 SMIM17P0DL12 118 aa12.58□□□□□ -0.4
HLA-DQB1-209ENST00000487676 C2orf83Q53S99 150 aa12.58□□□□□ -0.4
HLA-DQB1-209ENST00000487676 RPL7P18124 248 aaKnown RBP12.58□□□□□ -0.4
HLA-DQB1-209ENST00000487676 MC5RP33032 325 aa12.58□□□□□ -0.4
HLA-DQB1-209ENST00000487676 CCL11P51671 97 aa12.58□□□□□ -0.4
HLA-DQB1-209ENST00000487676 KLF5Q13887 457 aaPredicted RBP12.58□□□□□ -0.4
HLA-DQB1-209ENST00000487676 ADAMTSL5Q6ZMM2 481 aa12.58□□□□□ -0.4
HLA-DQB1-209ENST00000487676 CCL13Q99616 98 aa12.58□□□□□ -0.4
HLA-DQB1-209ENST00000487676 GP6Q9HCN6 339 aa12.58□□□□□ -0.4
HLA-DQB1-209ENST00000487676 GGTLC3B5MD39 225 aa12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 WFDC3Q8IUB2 231 aa12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 WIPF2Q8TF74 440 aaPredicted RBP12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 KIAA1549LQ6ZVL6 1849 aa12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 SP9P0CG40 484 aa12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 VDAC2P45880 294 aaPredicted RBP12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 RBPJQ06330 500 aa12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 CIARTQ8N365 385 aaPredicted RBP12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 MRPL16Q9NX20 251 aaKnown RBP12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 SAP30O75446 220 aa12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 ATP5LO75964 103 aa12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 SAA2P0DJI9 122 aaPredicted RBP12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 CYSLTR1Q9Y271 337 aa12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 USF3Q68DE3 2245 aa12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 KBTBD11-OT1A0A1B0GTJ5 212 aa12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 FOXC2Q99958 501 aa12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 OTORQ9NRC9 128 aa12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 CHTOPQ9Y3Y2 248 aaKnown RBP12.57□□□□□ -0.4
HLA-DQB1-209ENST00000487676 H0YJW9 148 aa12.56□□□□□ -0.4
HLA-DQB1-209ENST00000487676 CTRLP40313 264 aa12.56□□□□□ -0.4
HLA-DQB1-209ENST00000487676 MBNL2Q5VZF2 373 aaKnown RBP12.56□□□□□ -0.4
HLA-DQB1-209ENST00000487676 WDR82Q6UXN9 313 aa12.56□□□□□ -0.4
HLA-DQB1-209ENST00000487676 ZNF576Q9H609 170 aa12.56□□□□□ -0.4
HLA-DQB1-209ENST00000487676 DOCK7Q96N67 2140 aa12.56□□□□□ -0.4
HLA-DQB1-209ENST00000487676 APOMO95445 188 aa12.56□□□□□ -0.4
HLA-DQB1-209ENST00000487676 TFF1P04155 84 aa12.56□□□□□ -0.4
HLA-DQB1-209ENST00000487676 CLEC3BP05452 202 aa12.56□□□□□ -0.4
HLA-DQB1-209ENST00000487676 FAM214BQ7L5A3 538 aa12.56□□□□□ -0.4
HLA-DQB1-209ENST00000487676 PRR7Q8TB68 274 aa12.56□□□□□ -0.4
HLA-DQB1-209ENST00000487676 ITLN1Q8WWA0 313 aa12.56□□□□□ -0.4
HLA-DQB1-209ENST00000487676 CRIP3Q6Q6R5 217 aa12.55□□□□□ -0.4
HLA-DQB1-209ENST00000487676 ATP6V0BQ99437 205 aa12.55□□□□□ -0.4
HLA-DQB1-209ENST00000487676 SAA1P0DJI8 122 aaPredicted RBP12.55□□□□□ -0.4
HLA-DQB1-209ENST00000487676 COQ2Q96H96 371 aa12.55□□□□□ -0.4
HLA-DQB1-209ENST00000487676 RABAC1Q9UI14 185 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms