RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 CALML5Q9NZT1 146 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 TMEM216Q9P0N5 145 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 SLC23A2Q9UGH3 650 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 ANAPC10Q9UM13 185 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 FIS1Q9Y3D6 152 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 PCYT1BQ9Y5K3 369 aaPredicted RBP1.83□□□□□ -2.12
VPS41-213ENST00000485955 PXMP4Q9Y6I8 212 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 MED23Q9ULK4 1368 aa1.83□□□□□ -2.12
VPS41-213ENST00000485955 EDC4Q6P2E9 1401 aaKnown RBP1.83□□□□□ -2.12
VPS41-213ENST00000485955 DOCK8Q8NF50 2099 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 TGP01266 2768 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 NLRC5Q86WI3 1866 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 NOTCH1P46531 2555 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 AHCTF1Q8WYP5 2266 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 TRAV8-1A0A0A6YYK1 113 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 IGHV6-1A0A0B4J1U7 121 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 KNCNA6PVL3 124 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 CD300LBA8K4G0 201 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 F5H5P2 479 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 TMEM250H0YL14 139 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 RPL36A-HNRNPH2H7BZ11 118 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 AIPO00170 330 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 GYG2O15488 501 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 TCF21O43680 179 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 COX7A2P2O60397 106 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 BANF1O75531 89 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 POP7O75817 140 aaKnown RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 CDS2O95674 445 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 FAM107AO95990 144 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 HLA-DRB1P01911 266 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 IFNA4P05014 189 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 FABP3P05413 133 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 OR4Q2P0C623 313 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 ZNF25P17030 456 aaPredicted RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 RPS3P23396 243 aaKnown RBP eCLIP1.82□□□□□ -2.12
VPS41-213ENST00000485955 BLVRBP30043 206 aaPredicted RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 SRIP30626 198 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 G6PCP35575 357 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 PPP1CCP36873 323 aaKnown RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 POLR2HP52434 150 aaKnown RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 ZNF140P52738 457 aaPredicted RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 MP68P56378 58 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 KLF3P57682 345 aaPredicted RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 RPS20P60866 119 aaKnown RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 RPL23P62829 140 aaKnown RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 TNFAIP6P98066 277 aaPredicted RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 ERCC8Q13216 396 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 RHEBQ15382 184 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 RBMY1FQ15415 496 aaKnown RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 SSX1Q16384 188 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 MORN2Q502X0 79 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 RNASE10Q5GAN6 216 aaKnown RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 TCEAL5Q5H9L2 206 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 UBE2NLQ5JXB2 153 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 NXNL2Q5VZ03 156 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 SBSNQ6UWP8 590 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 SHISA6Q6ZSJ9 500 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 FAM19A3Q7Z5A8 133 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 DAZ4Q86SG3 579 aaKnown RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 PRNTQ86SH4 94 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 LINC00596Q86U02 117 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 SGPP2Q8IWX5 399 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 ANKRD29Q8N6D5 301 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 ZNF283Q8N7M2 679 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 LY6G5BQ8NDX9 201 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 OR13C4Q8NGS5 318 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 OR51H1Q8NH63 302 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 OR1L1Q8NH94 360 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 GPR119Q8TDV5 335 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 OR5P3Q8WZ94 311 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 MALSU1Q96EH3 234 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 C14orf144Q96I85 54 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 C18orf15Q96N68 181 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 ZNF382Q96SR6 550 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 SAMD10Q9BYL1 202 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 TBL1XR1Q9BZK7 514 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 DAZ1Q9NQZ3 744 aaKnown RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 LINC00527Q9UJ94 153 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 ACANP16112 2415 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 APCP25054 2843 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 NFASCO94856 1347 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 PRKDCP78527 4128 aaKnown RBP1.82□□□□□ -2.12
VPS41-213ENST00000485955 KIF20BQ96Q89 1820 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 TANC1Q9C0D5 1861 aa1.82□□□□□ -2.12
VPS41-213ENST00000485955 NIPBLQ6KC79 2804 aaeCLIP1.81□□□□□ -2.12
VPS41-213ENST00000485955 VPS13CQ709C8 3753 aa1.81□□□□□ -2.12
VPS41-213ENST00000485955 MUC22E2RYF6 1773 aaPredicted RBP1.81□□□□□ -2.12
VPS41-213ENST00000485955 hCG_1818297A0A087WSY0 165 aa1.81□□□□□ -2.12
VPS41-213ENST00000485955 A0A087WUU8 490 aa1.81□□□□□ -2.12
VPS41-213ENST00000485955 MEIKINA0A087WXM9 373 aa1.81□□□□□ -2.12
VPS41-213ENST00000485955 TMED7-TICAM2A0A0A6YYA0 188 aa1.81□□□□□ -2.12
VPS41-213ENST00000485955 TRAV4A0A0B4J268 109 aa1.81□□□□□ -2.12
VPS41-213ENST00000485955 CCL15-CCL14A0A0B4J2E2 113 aa1.81□□□□□ -2.12
VPS41-213ENST00000485955 LOC102725191A0A1B0GVB3 256 aa1.81□□□□□ -2.12
VPS41-213ENST00000485955 A0A1B0GVX0 72 aa1.81□□□□□ -2.12
VPS41-213ENST00000485955 FAM92AA1XBS5 289 aa1.81□□□□□ -2.12
VPS41-213ENST00000485955 OR4C45A6NMZ5 311 aa1.81□□□□□ -2.12
VPS41-213ENST00000485955 A8MT66 165 aa1.81□□□□□ -2.12
VPS41-213ENST00000485955 H3BSA7 217 aa1.81□□□□□ -2.12
VPS41-213ENST00000485955 K7ERU9 68 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms