RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ZNF600Q6ZNG1 722 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 S100A7AQ86SG5 101 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 C12orf45Q8N5I9 185 aaPredicted RBP6.15□□□□□ -1.42
USP40-216ENST00000485943 OR52B4Q8NGK2 314 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 OR2K2Q8NGT1 345 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 ZNF431Q8TF32 576 aaPredicted RBP6.15□□□□□ -1.42
USP40-216ENST00000485943 METTL26Q96S19 204 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 MAGT1Q9H0U3 335 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 MRPL27Q9P0M9 148 aaKnown RBP6.15□□□□□ -1.42
USP40-216ENST00000485943 MGAT4CQ9UBM8 478 aa6.15□□□□□ -1.42
USP40-216ENST00000485943 LSM5Q9Y4Y9 91 aaKnown RBP6.15□□□□□ -1.42
USP40-216ENST00000485943 SORL1Q92673 2214 aa6.15□□□□□ -1.43
USP40-216ENST00000485943 IGHV3OR16-8A0A075B7F1 116 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 TRAV14DV4A0A0A6YYC5 116 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 K7EIM0 57 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 PRAF2O60831 178 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 ADAP1O75689 374 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 SCAF4O95104 1147 aaKnown RBP6.14□□□□□ -1.43
USP40-216ENST00000485943 RNASE2P10153 161 aaKnown RBP6.14□□□□□ -1.43
USP40-216ENST00000485943 CBLN1P23435 193 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 NPPCP23582 126 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 OR10J1P30954 320 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 NUP62P37198 522 aaPredicted RBP6.14□□□□□ -1.43
USP40-216ENST00000485943 ELLP55199 621 aaPredicted RBP6.14□□□□□ -1.43
USP40-216ENST00000485943 CD81P60033 236 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 C2orf83Q53S99 150 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 NMSQ5H8A3 153 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 TOR2AQ5JU69 321 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 OR8G2PQ6IF36 304 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 BTNL8Q6UX41 500 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 HAPLN4Q86UW8 402 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 LRTM2Q8N967 370 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 OR1S2Q8NGQ3 325 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 SDHCQ99643 169 aaPredicted RBP6.14□□□□□ -1.43
USP40-216ENST00000485943 PBDC1Q9BVG4 233 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 PSENENQ9NZ42 101 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 HSPB7Q9UBY9 170 aa6.14□□□□□ -1.43
USP40-216ENST00000485943 IGKV3-7A0A075B6H7 116 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 C15orf62A8K5M9 175 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 INMT-MINDY4F8WBC2 141 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 INS-IGF2F8WCM5 200 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 H3BP45 60 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 CLN5O75503 358 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 CD5P06127 495 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 PET100P0DJ07 73 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 CAV2P51636 162 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 EGFEM1PQ0D2K5 195 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 KPRPQ5T749 579 aaPredicted RBP6.13□□□□□ -1.43
USP40-216ENST00000485943 Q6ZRM9 215 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 TMEM116Q8NCL8 245 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 OR10P1Q8NGE3 313 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 MITD1Q8WV92 249 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 RAB40CQ96S21 281 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 SEC22CQ9BRL7 303 aa6.13□□□□□ -1.43
USP40-216ENST00000485943 PUS1Q9Y606 427 aaKnown RBP eCLIP6.13□□□□□ -1.43
USP40-216ENST00000485943 IGHV3-49A0A0A0MS15 119 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 WI2-2373I1.2A0A1W2PRP0 233 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 OR4C46A6NHA9 309 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 A8MWP6 167 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 I3L2K1 104 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 CCSO14618 274 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 GOSR2O14653 212 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 PLA2G10O15496 165 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 IGLV1-51P01701 117 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 IL4P05112 153 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 CSN3P07498 182 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 P0C879 139 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 RD3LP0DJH9 198 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 TFPI2P48307 235 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 MFAP2P55001 183 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 CMC4P56277 68 aaPredicted RBP6.12□□□□□ -1.43
USP40-216ENST00000485943 KRTAP10-11P60412 298 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 POLR2GP62487 172 aaKnown RBP eCLIP6.12□□□□□ -1.43
USP40-216ENST00000485943 SRSF3P84103 164 aaKnown RBP6.12□□□□□ -1.43
USP40-216ENST00000485943 CYCSP99999 105 aaKnown RBP6.12□□□□□ -1.43
USP40-216ENST00000485943 RAB31Q13636 194 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 CD300EQ496F6 205 aaPredicted RBP6.12□□□□□ -1.43
USP40-216ENST00000485943 STX12Q86Y82 276 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 OR4X1Q8NH49 305 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 CACNG8Q8WXS5 425 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 TMEM190Q8WZ59 177 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 NPIPB3Q92617 1050 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 SIGLEC8Q9NYZ4 499 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 RABAC1Q9UI14 185 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 TRRAPQ9Y4A5 3859 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 SELENOKQ9Y6D0 94 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 NBEAL1Q6ZS30 2694 aa6.12□□□□□ -1.43
USP40-216ENST00000485943 IGHV3OR16-13A0A075B7E8 117 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 IGHV3-74A0A0B4J1X5 117 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 TRAV25A0A0B4J276 109 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 SNRPGP15A8MWD9 76 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 K7EIL1 84 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 K7EMT4 169 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 TMEM50AO95807 157 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 FCGR2BP31994 310 aaPredicted RBP6.11□□□□□ -1.43
USP40-216ENST00000485943 BTCP35070 178 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 GPX4P36969 197 aaPredicted RBP6.11□□□□□ -1.43
USP40-216ENST00000485943 LYZP61626 148 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 HBG1P69891 147 aa6.11□□□□□ -1.43
USP40-216ENST00000485943 HBG2P69892 147 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms